View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17061_low_24 (Length: 378)

Name: NF17061_low_24
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17061_low_24
NF17061_low_24
[»] chr5 (2 HSPs)
chr5 (188-341)||(37370036-37370189)
chr5 (13-181)||(41528174-41528350)
[»] chr6 (11 HSPs)
chr6 (10-171)||(33300775-33300936)
chr6 (10-181)||(5130961-5131133)
chr6 (10-181)||(26620707-26620879)
chr6 (10-181)||(26726686-26726858)
chr6 (10-181)||(8519567-8519739)
chr6 (278-364)||(33296266-33296352)
chr6 (10-181)||(34255805-34255985)
chr6 (213-274)||(33300709-33300770)
chr6 (10-181)||(28144681-28144861)
chr6 (273-326)||(33296353-33296408)
chr6 (323-360)||(29934904-29934941)
[»] chr7 (5 HSPs)
chr7 (10-181)||(4340835-4341007)
chr7 (10-181)||(48477660-48477835)
chr7 (10-181)||(42786118-42786293)
chr7 (10-181)||(21958828-21959003)
chr7 (10-49)||(19802542-19802581)
[»] scaffold0046 (1 HSPs)
scaffold0046 (10-181)||(90122-90293)
[»] chr8 (2 HSPs)
chr8 (10-181)||(20810641-20810812)
chr8 (10-181)||(5557417-5557597)
[»] chr4 (9 HSPs)
chr4 (10-181)||(13702236-13702408)
chr4 (10-181)||(13712729-13712901)
chr4 (10-181)||(1505630-1505802)
chr4 (10-181)||(4852241-4852410)
chr4 (10-181)||(5908791-5908968)
chr4 (10-178)||(5578725-5578900)
chr4 (10-178)||(5599511-5599688)
chr4 (323-364)||(2464284-2464325)
chr4 (323-364)||(6736787-6736828)
[»] chr1 (3 HSPs)
chr1 (10-181)||(14115167-14115337)
chr1 (323-364)||(411741-411782)
chr1 (323-355)||(11109768-11109800)
[»] scaffold0158 (1 HSPs)
scaffold0158 (10-181)||(37050-37237)
[»] chr3 (3 HSPs)
chr3 (60-181)||(14521251-14521380)
chr3 (323-364)||(45227502-45227543)
chr3 (10-52)||(14521399-14521441)
[»] scaffold0312 (1 HSPs)
scaffold0312 (323-364)||(18788-18829)
[»] chr2 (2 HSPs)
chr2 (323-364)||(45682293-45682334)
chr2 (323-360)||(2743789-2743826)
[»] scaffold0608 (1 HSPs)
scaffold0608 (323-355)||(5205-5237)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 188 - 341
Target Start/End: Complemental strand, 37370189 - 37370036
Alignment:
Q  188 cttctctaaagtacaaagctactgaaatttaacacattctcgtatactttatcatcgcatcccatgatgtgaatttactatcaataaagtatataaatta 287  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37370189 cttctctaaagtacaaagctactgaaatttgacacattctcgtatactttatcatcgcatcccatgatgtgaatttactatcaataaagtatataaatta 37370090  T
Q  288 ttttctcatttgtaccactcaatataaactatctcatcatttatctcttttcat 341  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37370089 ttttctcatttgtaccactcaatataaactatctcatcatttaactcttttcat 37370036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 41528174 - 41528350
Alignment:
Q  13 tactttgacatacttatttgagtatgtctctgattcttttcc--------gatagcaactagtttcggctaactaagccggagttccataactaaaattc 104  Q
    ||||||||||||||||| ||||||||||||||||| ||||          | || ||||||||||||||||||| |||||||||||| ||||||||||||    
T  41528174 tactttgacatacttatctgagtatgtctctgatttttttttttttttttggtaacaactagtttcggctaactgagccggagttccgtaactaaaattc 41528273  T
Q  105 ctcatttccaacgattggtaaaatgcacattaaatattgcttcggggctaattcattcgaaacataaatttcatgtt 181  Q
     |||||||||| |||||| ||||||| ||| | |||| ||||||  |||||||||| | |||||||| |||||||||    
T  41528274 atcatttccaatgattggcaaaatgcccataagatatggcttcgtagctaattcatactaaacataattttcatgtt 41528350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 7e-65; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 10 - 171
Target Start/End: Complemental strand, 33300936 - 33300775
Alignment:
Q  10 ttatactttgacatacttatttgagtatgtctctgattcttttccgatagcaactagtttcggctaactaagccggagttccataactaaaattcctcat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  33300936 ttatactttgacatacttatttgagtatgtctctgattcttttccgataacaactagtttcggctaacaaagccggagttccataactaaaatttctcat 33300837  T
Q  110 ttccaacgattggtaaaatgcacattaaatattgcttcggggctaattcattcgaaacataa 171  Q
    |||||||||| |||||||||||||| ||||||||||||   |||||||||||| ||||||||    
T  33300836 ttccaacgatcggtaaaatgcacataaaatattgcttcatagctaattcattccaaacataa 33300775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 5131133 - 5130961
Alignment:
Q  10 ttatactttgacatacttatttgagtatgtctctgattcttttccgatagcaactagtttcggctaactaagccggagttccataactaaaattcctca- 108  Q
    |||||||||||||||||||| ||||||||||||||||||||||  |||| |||||||||| |||||||| |||||||||||| ||||||||||||||||     
T  5131133 ttatactttgacatacttatctgagtatgtctctgattcttttatgataacaactagtttgggctaactgagccggagttccgtaactaaaattcctcat 5131034  T
Q  109 tttccaacgattggtaaaatgcacattaaatattgcttcggggctaattcattcgaaacataaatttcatgtt 181  Q
    ||||||| |||||| ||||||| ||| |||||||||||||   ||||||||||| |||||||| |||||||||    
T  5131033 tttccaatgattggcaaaatgcccataaaatattgcttcgtacctaattcattctaaacataattttcatgtt 5130961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 26620879 - 26620707
Alignment:
Q  10 ttatactttgacatacttatttgagtatgtctctgattcttttccgatagcaactagtttcggctaactaagccggagttccataactaaaattcctca- 108  Q
    |||||||||||||||||||| ||||||||||||||||||||||  |||| |||||||||| |||||||| |||||||||||| ||||||||||||||||     
T  26620879 ttatactttgacatacttatctgagtatgtctctgattcttttatgataacaactagtttgggctaactgagccggagttccgtaactaaaattcctcat 26620780  T
Q  109 tttccaacgattggtaaaatgcacattaaatattgcttcggggctaattcattcgaaacataaatttcatgtt 181  Q
    ||||||| |||||| ||||||| ||| ||||||| |||||  |||||||||||| |||||||| |||||||||    
T  26620779 tttccaatgattggcaaaatgcccataaaatattacttcgtagctaattcattctaaacataattttcatgtt 26620707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 26726858 - 26726686
Alignment:
Q  10 ttatactttgacatacttatttgagtatgtctctgattcttttccgatagcaactagtttcggctaactaagccggagttccataactaaaattcctca- 108  Q
    |||||||||||||||||||| ||||||||||||||||||||||  |||| |||||||||| |||||||| |||||||||||| ||||||||||||||||     
T  26726858 ttatactttgacatacttatctgagtatgtctctgattcttttatgataacaactagtttgggctaactgagccggagttccgtaactaaaattcctcat 26726759  T
Q  109 tttccaacgattggtaaaatgcacattaaatattgcttcggggctaattcattcgaaacataaatttcatgtt 181  Q
    ||||||| |||||| ||||||| ||| ||||||| |||||  |||||||||||| |||||||| |||||||||    
T  26726758 tttccaatgattggcaaaatgcccataaaatattacttcgtagctaattcattctaaacataattttcatgtt 26726686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 8519567 - 8519739
Alignment:
Q  10 ttatactttgacatacttatttgagtatgtctctgattcttttccgatagcaactagtttcggctaactaagccggagttccataactaaaattcctcat 109  Q
    |||||||||||||||||||| |||||||||||||||||||||||  ||| ||||||||||||| ||||||| ||| |||||||||||||||||| |||||    
T  8519567 ttatactttgacatacttatctgagtatgtctctgattcttttctaataacaactagtttcgggtaactaaaccgaagttccataactaaaatttctcat 8519666  T
Q  110 ttccaacgattggtaaaatg-cacattaaatattgcttcggggctaattcattcgaaacataaatttcatgtt 181  Q
    || ||| ||||||||||||| |  || ||||| |||||||  |||||||||||| || ||||| |||||||||    
T  8519667 tttcaatgattggtaaaatgaccaatgaaataatgcttcgtagctaattcattctaatcataactttcatgtt 8519739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 278 - 364
Target Start/End: Complemental strand, 33296352 - 33296266
Alignment:
Q  278 atataaattattttctcatttgtaccactcaatataaactatctcatcatttatctcttttcattatttgtacataaaccacattat 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33296352 atataaattattttctcatttgtaccactcaatataaactatctcatcatttatctcttttcattatttgtacataaaccacattat 33296266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 34255985 - 34255805
Alignment:
Q  10 ttatactttgacatacttatttgagtatgtctctgattct---------tttccgatagcaactagtttcggctaactaagccggagttccataactaaa 100  Q
    |||||||||||||||||||| |||||||||||||||||||         |||  | || || |||||||||||||||| |||||||||||| ||||||||    
T  34255985 ttatactttgacatacttatatgagtatgtctctgattctctttttttttttttggtaacagctagtttcggctaactgagccggagttccgtaactaaa 34255886  T
Q  101 attcctcatttccaacgattggtaaaatgcacattaaatattgcttcggggctaattcattcgaaacataaatttcatgtt 181  Q
    |||| |||||||||| |||||| ||||||| ||| | |||| ||||||  |||||||||| | |||||||| |||||||||    
T  34255885 attcatcatttccaatgattggcaaaatgcccataagatatggcttcgtagctaattcatactaaacataattttcatgtt 34255805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 213 - 274
Target Start/End: Complemental strand, 33300770 - 33300709
Alignment:
Q  213 aatttaacacattctcgtatactttatcatcgcatcccatgatgtgaatttactatcaataa 274  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33300770 aatttgacacattctcgtatactttatcatcgcatcccatgatgtgaatttactatcaataa 33300709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 28144681 - 28144861
Alignment:
Q  10 ttatactttgacatacttatttgagtatgtctctgattctttt--------ccgatagcaactagtttcggctaa-ctaagccggagttccataactaaa 100  Q
    |||||||||||||| ||||| ||||||||||||||||| ||||        | |||| ||||||||||||||||| |||| ||| |||| ||||||||||    
T  28144681 ttatactttgacatgcttatctgagtatgtctctgattttttttttttattctgataacaactagtttcggctaaactaaaccgaagttacataactaaa 28144780  T
Q  101 attcctcatttccaacgattggtaaaatgcac-attaaatattgcttcggggctaattcattcgaaacataaatttcatgtt 181  Q
    ||||||||||| |||||||||||||||| | | || ||||| ||||||   | |||||||||| |||||||| |||||||||    
T  28144781 attcctcattttcaacgattggtaaaatacccaatgaaataatgcttcatag-taattcattctaaacataactttcatgtt 28144861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 273 - 326
Target Start/End: Complemental strand, 33296408 - 33296353
Alignment:
Q  273 aaagtatataaattattttctcatttgtaccactcaatat--aaactatctcatca 326  Q
    |||||||||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  33296408 aaagtatataaattattttctcatttataccactcaatataaaaactatctcatca 33296353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 360
Target Start/End: Complemental strand, 29934941 - 29934904
Alignment:
Q  323 atcatttatctcttttcattatttgtacataaaccaca 360  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  29934941 atcattgatctcttttcactatttgtacataaaccaca 29934904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 4340835 - 4341007
Alignment:
Q  10 ttatactttgacatacttatttgagtatgtctctgattcttttccgatagcaactagtttcggctaactaagccggagttccataactaaaattcctcat 109  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4340835 ttatactttgacatacttatctgagtatgtctctgattcttttctgataacaactagtttcggctaactaaaccggagttccataactaaaattcctcat 4340934  T
Q  110 ttccaacgattggtaaaatg-cacattaaatattgcttcggggctaattcattcgaaacataaatttcatgtt 181  Q
    |||||||||||||||||||| |  || ||||| ||| |||  |||||||||||| |||||||| |||||||||    
T  4340935 ttccaacgattggtaaaatgtccaatgaaataatgcctcgtagctaattcattctaaacataactttcatgtt 4341007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 48477660 - 48477835
Alignment:
Q  10 ttatactttgacatacttatttgagtatgtctctgattcttttccg----atagcaactagtttcggctaactaagccggagttccataactaaaattcc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||| ||||||||||||||||||| |||||||||||| ||||||||||||     
T  48477660 ttatactttgacatacttatttgagtatgtctctgattctttttttttttataacaactagtttcggctaactgagccggagttccgtaactaaaattca 48477759  T
Q  106 tcatttccaacgattggtaaaatgcacattaaatattgcttcggggctaattcattcgaaacataaatttcatgtt 181  Q
    |||||||||| |||||| ||||||| ||| | |||||||||||  |||||||||| | |||||||| |||||||||    
T  48477760 tcatttccaatgattggcaaaatgcccataagatattgcttcgtagctaattcatactaaacataattttcatgtt 48477835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 42786293 - 42786118
Alignment:
Q  10 ttatactttgacatacttatttgagtatgtctctgattcttttccg----atagcaactagtttcggctaactaagccggagttccataactaaaattcc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||  |||||||||||||||||| |||||||||||| ||||||||||||     
T  42786293 ttatactttgacatacttatttgagtatgtctctgattctttttttttttatattaactagtttcggctaactgagccggagttccgtaactaaaattca 42786194  T
Q  106 tcatttccaacgattggtaaaatgcacattaaatattgcttcggggctaattcattcgaaacataaatttcatgtt 181  Q
    |||||||||| |||||| ||||||| ||| | |||||||||||  |||||||||| | |||||||| |||||||||    
T  42786193 tcatttccaatgattggcaaaatgcccataagatattgcttcgtagctaattcatactaaacataattttcatgtt 42786118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 21959003 - 21958828
Alignment:
Q  10 ttatactttgacatacttatttgagtatgtctctgattctttt--ccgatagcaactagtttcggctaa-ctaagccggagttccataactaaaattcct 106  Q
    |||||||||||||||||||| | ||||||||||||||| ||||  | |||| ||||||||||||||||| |||| ||| |||||||||||||||||||||    
T  21959003 ttatactttgacatacttatctaagtatgtctctgatttttttttctgataacaactagtttcggctaaactaaaccgaagttccataactaaaattcct 21958904  T
Q  107 catttccaacgattggtaaaatgcac-attaaatattgcttcggggctaattcattcgaaacataaatttcatgtt 181  Q
    |||||||||||||||||||||||| | || ||||| || |||   |||||||||||| |||||||| |||||||||    
T  21958903 catttccaacgattggtaaaatgcccaatgaaataatgattcatagctaattcattctaaacataactttcatgtt 21958828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 19802542 - 19802581
Alignment:
Q  10 ttatactttgacatacttatttgagtatgtctctgattct 49  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  19802542 ttatactttgacatacttatctgagtatgtctctgattct 19802581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 90122 - 90293
Alignment:
Q  10 ttatactttgacatacttatttgagtatgtctctgattcttttccgatagcaactagtttcggctaactaagccggagttccataactaaaattcctcat 109  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||| || ||||    
T  90122 ttatactttgacatacttatctgagtatgtctctgattcttttctgataacaactagtttcggctaactatgccggagttccataactaaaaatcttcat 90221  T
Q  110 ttccaacgattggtaaaatgcacattaaatattgcttcggggctaattcattcgaaacataaatttcatgtt 181  Q
    |||||||||| || ||||||| ||| |||||||||||||  |||||||||||| |||||||| | |||||||    
T  90222 ttccaacgatcggcaaaatgcccataaaatattgcttcgtagctaattcattctaaacataactctcatgtt 90293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 9e-52; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 20810812 - 20810641
Alignment:
Q  10 ttatactttgacatacttatttgagtatgtctctgattcttttccgatagcaactagtttcggctaactaagccggagttccataactaaaattcctcat 109  Q
    |||||||||||||||||||| ||||||||| ||| ||||||||| |||| |||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  20810812 ttatactttgacatacttatctgagtatgtatctaattcttttctgataacaactagtttcggctaactaagccggagttccgtaaccaaaattcctcat 20810713  T
Q  110 ttccaacgattggtaaaatgcacattaaatattgcttcggggctaattcattcgaaacataaatttcatgtt 181  Q
    |||||| |||| | |||||||  || |||||||||||||  |||||||||||| |||||||| |||||||||    
T  20810712 ttccaaggatttgcaaaatgcctataaaatattgcttcgtagctaattcattctaaacataattttcatgtt 20810641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 5557417 - 5557597
Alignment:
Q  10 ttatactttgacatacttatttgagtatgtctctgattctt---------ttccgatagcaactagtttcggctaactaagccggagttccataactaaa 100  Q
    |||||||||||||||||||| ||||||||||||||||| ||         ||  | || ||||||||||||||||||| |||||||||||| ||||||||    
T  5557417 ttatactttgacatacttatctgagtatgtctctgatttttctttcttttttttggtaacaactagtttcggctaactgagccggagttccgtaactaaa 5557516  T
Q  101 attcctcatttccaacgattggtaaaatgcacattaaatattgcttcggggctaattcattcgaaacataaatttcatgtt 181  Q
    |||| |||||||||| |||||| ||||||| ||| | |||| ||||||  |||||||||| | |||||||| |||||||||    
T  5557517 attcatcatttccaatgattggcaaaatgcccataagatatggcttcgtagctaattcatactaaacataattttcatgtt 5557597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 13702236 - 13702408
Alignment:
Q  10 ttatactttgacatacttatttgagtatgtctctgattcttttccgatagcaactagtttcggctaactaagccggagttccataactaaaattcctca- 108  Q
    |||||||||||||||||||| |||||||||||||| |||||||  |||| |||||||||| ||||||||||||||||||||| ||||||||||| ||||     
T  13702236 ttatactttgacatacttatctgagtatgtctctggttcttttatgataacaactagtttgggctaactaagccggagttccgtaactaaaatttctcat 13702335  T
Q  109 tttccaacgattggtaaaatgcacattaaatattgcttcggggctaattcattcgaaacataaatttcatgtt 181  Q
    ||||||| |||||| ||||||| ||| |||||||| || |  |||||||||||| |||||||| |||||||||    
T  13702336 tttccaatgattggcaaaatgcccataaaatattgttttgcagctaattcattctaaacataattttcatgtt 13702408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 13712729 - 13712901
Alignment:
Q  10 ttatactttgacatacttatttgagtatgtctctgattcttttccgatagcaactagtttcggctaactaagccggagttccataactaaaattcctca- 108  Q
    |||||||||||||||||||| |||||||||||||| |||||||  |||| |||||||||| ||||||||||||||||||||| ||||||||||| ||||     
T  13712729 ttatactttgacatacttatctgagtatgtctctggttcttttatgataacaactagtttgggctaactaagccggagttccgtaactaaaatttctcat 13712828  T
Q  109 tttccaacgattggtaaaatgcacattaaatattgcttcggggctaattcattcgaaacataaatttcatgtt 181  Q
    ||||||| |||||| ||||||| ||| |||||||| || |  |||||||||||| |||||||| |||||||||    
T  13712829 tttccaatgattggcaaaatgcccataaaatattgttttgcagctaattcattctaaacataattttcatgtt 13712901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 1505630 - 1505802
Alignment:
Q  10 ttatactttgacatacttatttgagtatgtctctgattcttttccgatagcaactagtttcggctaactaagccggagttccataactaaaattcctca- 108  Q
    |||||||||||||||||||| ||||||||||||||||||||||  |||| |||||||||| ||||||||||||| ||||||| ||||||||||| ||||     
T  1505630 ttatactttgacatacttatctgagtatgtctctgattcttttatgataacaactagtttgggctaactaagccagagttccgtaactaaaatttctcat 1505729  T
Q  109 tttccaacgattggtaaaatgcacattaaatattgcttcggggctaattcattcgaaacataaatttcatgtt 181  Q
    ||||||  |||||| ||||||| ||| ||||||| |||||   ||||||||||  |||||||| |||||||||    
T  1505730 tttccagtgattggcaaaatgcccataaaatatttcttcgtaactaattcattttaaacataattttcatgtt 1505802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 4852241 - 4852410
Alignment:
Q  10 ttatactttgacatacttatttgagtatgtctctgattcttttccgatagcaactagtttcggctaactaagccggagttccataactaaaattcctcat 109  Q
    |||||||||||||||||||| |  |||||||||||||||||||  |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4852241 ttatactttgacatacttatctacgtatgtctctgattcttttttgataacaacttgtttcggctaactaagccggagttccataactaaaattcctcat 4852340  T
Q  110 ttccaacgattggtaaaatgcacattaaatattgcttcggggctaattcattcgaaacataaatttcatgtt 181  Q
    ||||||| |||||  |||| | ||| ||||||||| |||    |||||||||| |||||||| |||||||||    
T  4852341 ttccaacaattgg-caaatacccataaaatattgc-tcgcaaataattcattctaaacataactttcatgtt 4852410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 5908791 - 5908968
Alignment:
Q  10 ttatactttgacatacttatttgagtatgtctctgattcttttccg------atagcaactagtttcggctaactaagccggagttccataactaaaatt 103  Q
    |||||||||||||||||||||||||||||||||||||||||||         ||| ||||||||||||||||||| || ||||||||| |||||||||||    
T  5908791 ttatactttgacatacttatttgagtatgtctctgattctttttttttttttataacaactagtttcggctaactgagtcggagttccgtaactaaaatt 5908890  T
Q  104 cctcatttccaacgattggtaaaatgcacattaaatattgcttcggggctaattcattcgaaacataaatttcatgtt 181  Q
    | |||||||||| |||||| ||||||| ||| | |||||||||||  |||||||||| | |||||||| |||||||||    
T  5908891 catcatttccaatgattggcaaaatgcccataagatattgcttcgtagctaattcatactaaacataattttcatgtt 5908968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 178
Target Start/End: Complemental strand, 5578900 - 5578725
Alignment:
Q  10 ttatactttgacatacttatttgagtatgtctctgattctttt-----ccgatagcaactagtttcggctaa-ctaagccggagttccataactaaaatt 103  Q
    |||||||||||||||||||| ||||||||||||| |||  |||     | |||| |||||| |||| ||||| |||| ||| ||||||||||||||||||    
T  5578900 ttatactttgacatacttatctgagtatgtctctcatttatttttcttctgataacaactaatttcagctaaactaaaccgaagttccataactaaaatt 5578801  T
Q  104 cctcatttccaacgattggtaaaatgcac-attaaatattgcttcggggctaattcattcgaaacataaatttcat 178  Q
    ||||||||||||||||||||||||| | | || ||||| ||||||    ||||||||||| |||||||| ||||||    
T  5578800 cctcatttccaacgattggtaaaatacccaatgaaataatgcttcataactaattcattctaaacataactttcat 5578725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 178
Target Start/End: Original strand, 5599511 - 5599688
Alignment:
Q  10 ttatactttgacatacttatttgagtatgtctctgattc-ttttccgatagcaactagtttcggctaactaagccgg--------agttccataactaaa 100  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||  |||| |||  |||||||||||||| ||||||        |||||| ||||||||    
T  5599511 ttatactttgacatacttatctgagtatgtctttgattctttttttgataacaaaaagtttcggctaactgagccggagttccgtagttccgtaactaaa 5599610  T
Q  101 attcctcatttccaacgattggtaaaatgcacattaaatattgcttcggggctaattcattcgaaacataaatttcat 178  Q
    |||| |||||||| | |||||| ||||||| ||| | |||||||||||  |||||||||| | |||||||| ||||||    
T  5599611 attcatcatttcctatgattggcaaaatgcccataagatattgcttcgtagctaattcatactaaacataattttcat 5599688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 364
Target Start/End: Complemental strand, 2464325 - 2464284
Alignment:
Q  323 atcatttatctcttttcattatttgtacataaaccacattat 364  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  2464325 atcatttatctcttttcactatttgtacataaaccacattat 2464284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 323 - 364
Target Start/End: Original strand, 6736787 - 6736828
Alignment:
Q  323 atcatttatctcttttcattatttgtacataaaccacattat 364  Q
    |||||||||||||||||| ||||||||||||||||| |||||    
T  6736787 atcatttatctcttttcactatttgtacataaaccatattat 6736828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 14115337 - 14115167
Alignment:
Q  10 ttatactttgacatacttatttgagtatgtctctgattcttttccgatagcaactagtttcggctaactaagccggagttccataactaaaattcctcat 109  Q
    |||||||||||||||||||| |  ||||||||||||| |||||  |||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14115337 ttatactttgacatacttatctacgtatgtctctgatccttttttgataacaactagtttcggctaactaagtcggagttccataactaaaattcctcat 14115238  T
Q  110 ttccaacgattggtaaaatgcacattaaatattgcttcggggctaattcattcgaaacataaatttcatgtt 181  Q
    ||||||||||| |  |||| | ||| || ||||||||||  | |||||||||| |||||||| |||||||||    
T  14115237 ttccaacgatt-gacaaatacccataaattattgcttcgtagataattcattctaaacataactttcatgtt 14115167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 323 - 364
Target Start/End: Original strand, 411741 - 411782
Alignment:
Q  323 atcatttatctcttttcattatttgtacataaaccacattat 364  Q
    |||| ||||||||||||| |||||||||||||||||||||||    
T  411741 atcaattatctcttttcactatttgtacataaaccacattat 411782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 355
Target Start/End: Complemental strand, 11109800 - 11109768
Alignment:
Q  323 atcatttatctcttttcattatttgtacataaa 355  Q
    |||||||||||||||||| ||||||||||||||    
T  11109800 atcatttatctcttttcactatttgtacataaa 11109768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 37237 - 37050
Alignment:
Q  10 ttatactttgacatacttatttgagtatgtctctgattcttttcc--------gatagcaactagtttcggctaactaagccggagttccata------- 94  Q
    |||||||||||||||||||| | ||||||||||||||||||||          | || ||||||||||||||||||| || ||||||||| ||           
T  37237 ttatactttgacatacttatctaagtatgtctctgattcttttttttttttttggtaacaactagtttcggctaactgagtcggagttccgtagttcctt 37138  T
Q  95 -actaaaattcctcatttccaacgattggtaaaatgcacattaaatattgcttcggggctaattcattcgaaacataaatttcatgtt 181  Q
     |||||||||| |||||||||| |||||| ||||| | ||| | |||| ||||||  |||||||||| | |||||||| |||||||||    
T  37137 aactaaaattcatcatttccaatgattggcaaaattcccataagatatggcttcgtagctaattcatactaaacataattttcatgtt 37050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 181
Target Start/End: Complemental strand, 14521380 - 14521251
Alignment:
Q  60 caactagtttcggctaactaagccggagttccata--------actaaaattcctcatttccaacgattggtaaaatgcacattaaatattgcttcgggg 151  Q
    ||||||||||||||||||| |||||||||||| ||        |||||||||| |||||||||| |||||| ||||||| ||| | |||| ||||||  |    
T  14521380 caactagtttcggctaactgagccggagttccgtagttccgtaactaaaattcatcatttccaatgattggcaaaatgcccataagatatggcttcgtag 14521281  T
Q  152 ctaattcattcgaaacataaatttcatgtt 181  Q
    |||||||||   |||||||| |||||||||    
T  14521280 ctaattcatattaaacataattttcatgtt 14521251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 364
Target Start/End: Complemental strand, 45227543 - 45227502
Alignment:
Q  323 atcatttatctcttttcattatttgtacataaaccacattat 364  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  45227543 atcatttatctcttttcactatttgtacataaaccacattat 45227502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 14521441 - 14521399
Alignment:
Q  10 ttatactttgacatacttatttgagtatgtctctgattctttt 52  Q
    |||||||||||||||||||| || |||||||||||||||||||    
T  14521441 ttatactttgacatacttatctgggtatgtctctgattctttt 14521399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 323 - 364
Target Start/End: Complemental strand, 18829 - 18788
Alignment:
Q  323 atcatttatctcttttcattatttgtacataaaccacattat 364  Q
    |||| ||||||||||||| |||||||||||||||||||||||    
T  18829 atcaattatctcttttcactatttgtacataaaccacattat 18788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 323 - 364
Target Start/End: Complemental strand, 45682334 - 45682293
Alignment:
Q  323 atcatttatctcttttcattatttgtacataaaccacattat 364  Q
    |||||||||||||||||| |||||||| ||||||||||||||    
T  45682334 atcatttatctcttttcactatttgtaaataaaccacattat 45682293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 360
Target Start/End: Complemental strand, 2743826 - 2743789
Alignment:
Q  323 atcatttatctcttttcattatttgtacataaaccaca 360  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  2743826 atcattgatctcttttcactatttgtacataaaccaca 2743789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 355
Target Start/End: Complemental strand, 5237 - 5205
Alignment:
Q  323 atcatttatctcttttcattatttgtacataaa 355  Q
    |||||||||||||||||| ||||||||||||||    
T  5237 atcatttatctcttttcactatttgtacataaa 5205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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