View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17061_low_28 (Length: 364)
Name: NF17061_low_28
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17061_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 38377318 - 38376967
Alignment:
| Q |
1 |
ctacgtttgcttgacatatacacaaatataacagagaacaaatttcatacataatctgtttgtaattgaatgctgcttataacttaacagatattactga |
100 |
Q |
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| T |
38377318 |
ctacgtttgcttgacatatacacaaatataacaaagaacaaatttcatacataatctgtttgtaattgaatgctgcttataacttaacagatattactga |
38377219 |
T |
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| Q |
101 |
tctctaattacaatgtgttctatttttaatttgttactataaaagtaagat----------atgagatctcttttactagcaacatgtaaaaaataatcc |
190 |
Q |
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| T |
38377218 |
tctctaattacaatgtgttctatttttaatttgttactataaaagtaagatatctcatgtaatgagatatcttttactagcaacatgtaaaaaataatcc |
38377119 |
T |
|
| Q |
191 |
ttgctcttaagctataaaatctcatgagaagatcaatgtcctcattggaagtgcatttttatgtttcnnnnnnnaattccaatattctaacttgttaaag |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38377118 |
ttgctcttaagctataaaatctcatgagaagatcaatgtcctcattggaagtgcatttttatgtttctttttttaattccaatattctaacttgttaaag |
38377019 |
T |
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| Q |
291 |
tttcacctcaatgcatgttagatttagggttgttttgatttatttatgggcttgtgt |
347 |
Q |
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| T |
38377018 |
tttcacc-----gcatgttagatttagggctgttttgatttatttattggcttgtgt |
38376967 |
T |
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