View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17061_low_3 (Length: 645)

Name: NF17061_low_3
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17061_low_3
NF17061_low_3
[»] chr5 (3 HSPs)
chr5 (1-626)||(6255477-6256108)
chr5 (414-489)||(43177258-43177333)
chr5 (415-477)||(21240368-21240430)
[»] chr7 (7 HSPs)
chr7 (316-492)||(4154511-4154688)
chr7 (385-492)||(21562555-21562663)
chr7 (317-457)||(34868122-34868259)
chr7 (435-537)||(779317-779419)
chr7 (384-489)||(3100767-3100873)
chr7 (440-491)||(779260-779311)
chr7 (437-474)||(34866555-34866592)
[»] chr8 (4 HSPs)
chr8 (384-490)||(15699510-15699617)
chr8 (384-489)||(36586923-36587027)
chr8 (261-430)||(28235852-28236022)
chr8 (478-542)||(15699543-15699607)
[»] chr3 (4 HSPs)
chr3 (362-493)||(28426070-28426202)
chr3 (414-468)||(809092-809146)
chr3 (342-428)||(940415-940501)
chr3 (440-537)||(11513453-11513550)
[»] scaffold0050 (1 HSPs)
scaffold0050 (371-477)||(74423-74531)
[»] chr1 (3 HSPs)
chr1 (392-491)||(23353104-23353204)
chr1 (440-489)||(40608659-40608707)
chr1 (414-473)||(18620757-18620817)
[»] chr2 (2 HSPs)
chr2 (437-489)||(32316073-32316125)
chr2 (384-476)||(21775407-21775500)
[»] chr4 (1 HSPs)
chr4 (415-473)||(10235683-10235742)
[»] chr6 (1 HSPs)
chr6 (384-476)||(33114118-33114211)
[»] scaffold0010 (1 HSPs)
scaffold0010 (440-484)||(124024-124068)


Alignment Details
Target: chr5 (Bit Score: 525; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 1 - 626
Target Start/End: Complemental strand, 6256108 - 6255477
Alignment:
Q  1 gaatagagataagagtgtccattgtcaagtggtcccaactttatgtataatagtccaaaatgagagggtagtttagtttctacgtgaataagattagatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6256108 gaatagagataagagtgtccattgtcaagtggtcccaactttatgtataatagtccaaaatgagagggtagtttagtttctacgtgaataagattagatc 6256009  T
Q  101 ctattcctatcgtatccctacatttggaacacatttcgaggtggattggaaactattctctcccaaatgattgtttgagatgaggaattagtcttctatg 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6256008 ctattcctatcgtatcactacatttggaacacatttcgaggtggattggaaactattctctcccaaatgattgtttgagatgaggaattagtcttctatg 6255909  T
Q  201 gttatgtagttgcagcgagtacaatattaaaaattaaggtttagtcggttgaagttatgtcttgtattttcgtgacttatgcttcaagcaatttgggcaa 300  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||| ||||||||||||||| |    
T  6255908 gttatgtagttgcaccgagtacaatattaaaaattaaggtttagtcagttgaagttatgtcttgtatttttgtgatttatgcctcaagcaatttgggcca 6255809  T
Q  301 taagtcatatttgagcgttctaaatgtttttagaagtcctttgaggcggcgtccttaagagggcgcatctaaggccgttttgtcccttctagagggcgtt 400  Q
    ||||||| ||||||||||||||||||||| |||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||| ||||| |||    
T  6255808 taagtcagatttgagcgttctaaatgtttctagaagtcctttgaagtggcgttcttaagagggcgcatctaaggccgttttgtcccttctggagggtgtt 6255709  T
Q  401 gtgcccttgattgtatattggcggtccacagcctcgaaacacgagtcttgggacaagacgaaatgattaattatgaaattgatggtccacaaccttccaa 500  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||    
T  6255708 gtgcccttgattgtatattggcggtccacaacctcgaaacacgagtcttggcacaagacgaagtgattaattatgaaattgatgatccacaaccttccaa 6255609  T
Q  501 gcaccagtattaggacaagacaaaatgattaattatggaatttatgacacagattacaagaccatatgtatagtgtttaagtccatatatatacttag-- 598  Q
    | ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  6255608 gtaccggtattaggacaagacaaaatgattaattatgaaatttatgacacagattacaagaccatatgtatagtgtttaagtccatatatatacttagct 6255509  T
Q  599 ----ctttgaactatattcaattattgtattt 626  Q
        ||||||||||||||||||||||||||||    
T  6255508 ttagctttgaactatattcaattattgtattt 6255477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 414 - 489
Target Start/End: Original strand, 43177258 - 43177333
Alignment:
Q  414 tatattggcggtccacagcctcgaaacacgagtcttgggacaagacgaaatgattaattatgaaattgatggtcca 489  Q
    ||||||| |||||||||||| | || |||||||||||||||||| |||| |||||||||||  |||||||||||||    
T  43177258 tatattgacggtccacagcccccaagcacgagtcttgggacaaggcgaagtgattaattatagaattgatggtcca 43177333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 415 - 477
Target Start/End: Complemental strand, 21240430 - 21240368
Alignment:
Q  415 atattggcggtccacagcctcgaaacacgagtcttgggacaagacgaaatgattaattatgaa 477  Q
    |||||| |||||||||||| | ||||||||||||||| |||||||| | ||||||||||||||    
T  21240430 atattgacggtccacagcccccaaacacgagtcttggaacaagacggagtgattaattatgaa 21240368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 316 - 492
Target Start/End: Original strand, 4154511 - 4154688
Alignment:
Q  316 cgttctaaatgtttttagaagtcctttgaggcggcgtccttaagagggcgcatctaaggccgttttgtcccttctagagggcgttgtgcccttgattgta 415  Q
    ||||||| |||||| |||||| | ||||||| |||| |||||| ||| |||  |||||||||||||| ||||| | ||| |||||||||| || ||| ||    
T  4154511 cgttctagatgtttctagaagccttttgaggtggcgcccttaacaggacgcgcctaaggccgttttggcccttttggagagcgttgtgcctttaattata 4154610  T
Q  416 tattggcggtccacag-cctcgaaacacgagtcttgggacaagacgaaatgattaattatgaaattgatggtccacaa 492  Q
    |||||    ||||||| || | || |||||||||||||||||||||| ||||||||||||||| | ||| ||||||||    
T  4154611 tattgattatccacagtcccccaagcacgagtcttgggacaagacgacatgattaattatgaagtcgatagtccacaa 4154688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 385 - 492
Target Start/End: Complemental strand, 21562663 - 21562555
Alignment:
Q  385 ccttctagagggcgttgtgcccttgattgtatattggcggtccacagcct-cgaaacacgagtcttgggacaagacgaaatgattaattatgaaattgat 483  Q
    |||||| || || ||||||||||| ||| ||||||||| ||||||||||| | || |||||||||||||||||| |||  |||||| ||||||| |||||    
T  21562663 ccttctggatggtgttgtgcccttaattatatattggcagtccacagcctcccaatcacgagtcttgggacaaggcgatgtgattatttatgaagttgat 21562564  T
Q  484 ggtccacaa 492  Q
     ||| ||||    
T  21562563 agtctacaa 21562555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 317 - 457
Target Start/End: Original strand, 34868122 - 34868259
Alignment:
Q  317 gttctaaatgtttttagaagtcctttgaggcggcgtccttaagagggcgcatctaaggccgttttgtcccttctagagggcgttgtgcccttgattgtat 416  Q
    |||||| |||||| |||||| | |||||||||||| |||||||||| |||| ||||| |||||||| |||||   ||||| ||||||    | ||| |||    
T  34868122 gttctagatgtttctagaagccttttgaggcggcgcccttaagaggacgcacctaagtccgttttggcccttacggagggtgttgtg----taattatat 34868217  T
Q  417 attggcggtccac-agcctcgaaacacgagtcttgggacaag 457  Q
    |||| |||||||| | || | |||||||||||||||||||||    
T  34868218 attgacggtccacaaccccccaaacacgagtcttgggacaag 34868259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 435 - 537
Target Start/End: Original strand, 779317 - 779419
Alignment:
Q  435 cgaaacacgagtcttgggacaagacgaaatgattaattatgaaattgatggtccacaaccttccaagcaccagtattaggacaagacaaaatgattaatt 534  Q
    |||| |||||||||||| ||||  |||| |||||||||||||| | ||| ||||||||||  |||||||| ||| || | ||||| |||| |||||||||    
T  779317 cgaagcacgagtcttggaacaaagcgaagtgattaattatgaagtcgatagtccacaaccccccaagcacgagtcttggaacaaggcaaagtgattaatt 779416  T
Q  535 atg 537  Q
    |||    
T  779417 atg 779419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 489
Target Start/End: Original strand, 3100767 - 3100873
Alignment:
Q  384 cccttctagagggcgttgtgcccttgattgtatattggcggtccacagcctcgaaa-cacgagtcttgggacaagacgaaatgattaattatgaaattga 482  Q
    ||||||| ||||||||||||||||| |||  | ||||  ||||||||||  |  || |||||||||||||||||| | || ||||| |||||||| ||||    
T  3100767 cccttctggagggcgttgtgcccttaattacacattgatggtccacagctccacaagcacgagtcttgggacaaggcaaagtgatttattatgaagttga 3100866  T
Q  483 tggtcca 489  Q
    |||||||    
T  3100867 tggtcca 3100873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 491
Target Start/End: Original strand, 779260 - 779311
Alignment:
Q  440 cacgagtcttgggacaagacgaaatgattaattatgaaattgatggtccaca 491  Q
    |||||||||||||||||| |||| |||||||||||||| | ||| |||||||    
T  779260 cacgagtcttgggacaaggcgaagtgattaattatgaagtcgatagtccaca 779311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 474
Target Start/End: Original strand, 34866555 - 34866592
Alignment:
Q  437 aaacacgagtcttgggacaagacgaaatgattaattat 474  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  34866555 aaacacgagtattgggacaagacgaagtgattaattat 34866592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 7e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 384 - 490
Target Start/End: Original strand, 15699510 - 15699617
Alignment:
Q  384 cccttctagagggcgttgtgcccttgattgtatattggcggtccacagcctcgaaa-cacgagtcttgggacaagacgaaatgattaattatgaaattga 482  Q
    ||||||| |||||| |||||||||| ||| ||||||| ||||||||| ||||  || |||||||||||||||||| |||| |||||||||||||||||||    
T  15699510 cccttctggagggcattgtgcccttaattatatattgacggtccacaacctcccaagcacgagtcttgggacaaggcgaagtgattaattatgaaattga 15699609  T
Q  483 tggtccac 490  Q
    ||| ||||    
T  15699610 tggcccac 15699617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 384 - 489
Target Start/End: Complemental strand, 36587027 - 36586923
Alignment:
Q  384 cccttctagagggcgttgtgcccttgattgtatattggcggtccacagcctcgaaacacgagtcttgggacaagacgaaatgattaattatgaaattgat 483  Q
    |||||||||||||| || |  |||| ||| ||||||| ||||||||| || | |||||||||| ||||||| |  |||||||||||||||||||||||||    
T  36587027 cccttctagagggcattatatccttcattatatattgacggtccacaacccc-aaacacgagttttgggaccaagcgaaatgattaattatgaaattgat 36586929  T
Q  484 ggtcca 489  Q
    ||||||    
T  36586928 ggtcca 36586923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 261 - 430
Target Start/End: Complemental strand, 28236022 - 28235852
Alignment:
Q  261 cttgtattttcgtgacttatgcttcaagcaatttgggcaataagtcatatttg-agcgttctaaatgtttttagaagtcctttgaggcggcgtccttaag 359  Q
    ||||||||| |||||||||  |  ||||||| |||| |  ||||||| ||||  ||||||||| ||||||||| ||| | ||||||||||||  | ||||    
T  28236022 cttgtatttccgtgacttagaccccaagcaacttggactctaagtcagatttatagcgttctagatgtttttaaaagccttttgaggcggcgatcataag 28235923  T
Q  360 agggcgcatctaaggccgttttgtcccttctagagggcgttgtgcccttgattgtatattggcggtccaca 430  Q
    ||  ||   ||||||| |||||| ||||||| ||| | ||||||||||| ||| ||||||| |||||||||    
T  28235922 agaacgtgcctaaggctgttttgacccttctggagagtgttgtgcccttaattatatattgacggtccaca 28235852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 478 - 542
Target Start/End: Original strand, 15699543 - 15699607
Alignment:
Q  478 attgatggtccacaaccttccaagcaccagtattaggacaagacaaaatgattaattatggaatt 542  Q
    ||||| |||||||||||| |||||||| ||| || ||||||| | || |||||||||||| ||||    
T  15699543 attgacggtccacaacctcccaagcacgagtcttgggacaaggcgaagtgattaattatgaaatt 15699607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 362 - 493
Target Start/End: Complemental strand, 28426202 - 28426070
Alignment:
Q  362 ggcgcatctaaggccgtttt-gtcccttctagagggcgttgtgcccttgattgtatattggcggtccacagcctcgaaacacgagtcttgggacaagacg 460  Q
    |||||| ||||||| ||||| | ||||||| ||||||||||| ||||| ||| ||||||| |||||||||||| | || ||| |||||||||||||| |     
T  28426202 ggcgcacctaaggctgtttttggcccttctggagggcgttgtacccttaattatatattgacggtccacagcccccaagcacaagtcttgggacaaggca 28426103  T
Q  461 aaatgattaattatgaaattgatggtccacaac 493  Q
    |||||||||||||| || | ||| |||||||||    
T  28426102 aaatgattaattataaattcgatagtccacaac 28426070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 809146 - 809092
Alignment:
Q  414 tatattggcggtccacagcctcgaaacacgagtcttgggacaagacgaaatgatt 468  Q
    |||| ||||||||||||||| | ||||| ||||||||||||||| ||||||||||    
T  809146 tataatggcggtccacagcccccaaacatgagtcttgggacaaggcgaaatgatt 809092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 428
Target Start/End: Complemental strand, 940501 - 940415
Alignment:
Q  342 tgaggcggcgtccttaagagggcgcatctaaggccgttttgtcccttctagagggcgttgtgcccttgattgtatattggcggtcca 428  Q
    |||||||||| ||||  |||| ||| |||| ||| |||| | ||||||||||||||| ||||||||| ||| ||||||| |||||||    
T  940501 tgaggcggcgcccttcggaggacgcgtctagggctgtttgggcccttctagagggcggtgtgcccttaattatatattgacggtcca 940415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 537
Target Start/End: Complemental strand, 11513550 - 11513453
Alignment:
Q  440 cacgagtcttgggacaagacgaaatgattaattatgaaattgatggtccacaaccttccaagcaccagtattaggacaagacaaaatgattaattatg 537  Q
    |||||||||||||||||| |||| | ||||||| ||||  |||| ||||||| ||  |||||||| ||| || |||||||   || ||||||||||||    
T  11513550 cacgagtcttgggacaaggcgaagttattaattgtgaaggtgatagtccacagccccccaagcacgagtcttgggacaaggtgaagtgattaattatg 11513453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 371 - 477
Target Start/End: Original strand, 74423 - 74531
Alignment:
Q  371 aaggccgttttgtcccttctagagggcgtt-gtgcccttgattgtatattggcggtccacagc-ctcgaaacacgagtcttgggacaagacgaaatgatt 468  Q
    |||||||||| | ||||||| |||||| || |||||||| |||  |||||| ||||||||||| | | |||| |||||||| ||||||| |||| |||||    
T  74423 aaggccgtttggacccttctggagggcatttgtgcccttaattacatattgacggtccacagcaccccaaactcgagtcttaggacaaggcgaagtgatt 74522  T
Q  469 aattatgaa 477  Q
    |||||||||    
T  74523 aattatgaa 74531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 392 - 491
Target Start/End: Complemental strand, 23353204 - 23353104
Alignment:
Q  392 gagggcgttgtgcccttgattgtatattggcggtccacagcctcgaaa-cacgagtcttgggacaagacgaaatgattaattatgaaattgatggtccac 490  Q
    |||| |||||||||||| ||| ||||||| || |||||| || |  || ||| |||||||||||||| |||| |||||||||||||| | ||||||||||    
T  23353204 gaggacgttgtgcccttaattatatattgacgctccacaaccccccaagcacaagtcttgggacaaggcgaagtgattaattatgaattcgatggtccac 23353105  T
Q  491 a 491  Q
    |    
T  23353104 a 23353104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 489
Target Start/End: Complemental strand, 40608707 - 40608659
Alignment:
Q  440 cacgagtcttgggacaagacgaaatgattaattatgaaattgatggtcca 489  Q
    ||||||||| |||||||  |||| ||||||||||||||||||||||||||    
T  40608707 cacgagtct-gggacaaagcgaagtgattaattatgaaattgatggtcca 40608659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 414 - 473
Target Start/End: Original strand, 18620757 - 18620817
Alignment:
Q  414 tatattggcggtccacagcctcgaaa-cacgagtcttgggacaagacgaaatgattaatta 473  Q
    ||||||| ||||||||||||||  || |||||||||||||||| | |||| ||||||||||    
T  18620757 tatattgacggtccacagcctcccaagcacgagtcttgggacatggcgaagtgattaatta 18620817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 437 - 489
Target Start/End: Original strand, 32316073 - 32316125
Alignment:
Q  437 aaacacgagtcttgggacaagacgaaatgattaattatgaaattgatggtcca 489  Q
    ||||||||||||||||||||| |||| ||||||||||| | || |||||||||    
T  32316073 aaacacgagtcttgggacaaggcgaagtgattaattataatatggatggtcca 32316125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 476
Target Start/End: Original strand, 21775407 - 21775500
Alignment:
Q  384 cccttctagagggc-gttgtgcccttgattgtatattggcggtccacagcctcgaaacacgagtcttgggacaagacgaaatgattaattatga 476  Q
    |||||||||||||  |||||| |||| |||  |||||| ||||||||| |  | ||||||||||||| |||| || |||||| |||||||||||    
T  21775407 cccttctagaggggtgttgtgtccttaattagatattgacggtccacaactcccaaacacgagtctttggacgaggcgaaataattaattatga 21775500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 473
Target Start/End: Complemental strand, 10235742 - 10235683
Alignment:
Q  415 atattggcggtccacagcctcgaaa-cacgagtcttgggacaagacgaaatgattaatta 473  Q
    |||||| ||||||| ||||||  || |||||||||||||||||| |||||||||||||||    
T  10235742 atattgacggtccaaagcctcctaagcacgagtcttgggacaaggcgaaatgattaatta 10235683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 476
Target Start/End: Complemental strand, 33114211 - 33114118
Alignment:
Q  384 cccttctagagggcgttgtgcccttgattgtatattggcggtccacag-cctcgaaacacgagtcttgggacaagacgaaatgattaattatga 476  Q
    |||||||||||||||||||| |||| |||  |||| | |||||||||| || | ||||||||| |||||||| || | || ||||| |||||||    
T  33114211 cccttctagagggcgttgtgtccttaattagatatcgacggtccacagtcccccaaacacgagccttgggacgaggcaaagtgattgattatga 33114118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 440 - 484
Target Start/End: Original strand, 124024 - 124068
Alignment:
Q  440 cacgagtcttgggacaagacgaaatgattaattatgaaattgatg 484  Q
    |||||||||||||| ||| |||| |||||||||||||| ||||||    
T  124024 cacgagtcttgggataaggcgaagtgattaattatgaagttgatg 124068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University