View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17061_low_34 (Length: 323)

Name: NF17061_low_34
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17061_low_34
NF17061_low_34
[»] chr1 (2 HSPs)
chr1 (23-323)||(14608941-14609243)
chr1 (157-287)||(14599289-14599420)


Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 23 - 323
Target Start/End: Original strand, 14608941 - 14609243
Alignment:
Q  23 acaaaaaattgtcaaattcgtctctaattttatcgttaaaggttagaaacgtcaaatttgatgatcaattttactgtctcaaaattttttcgttaattca 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  14608941 acaaaaaattgtcaaattcgtctctaattttatcgttaaaggttagagacgtcaaatttgatgatcaattttactgtctcaaaatttt-tcgttaattca 14609039  T
Q  123 aattttataatagtatatattattgtgacaataaaaactaactagaatatataataataccaatttatcaggtacaagatttgcagagattgttttatag 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14609040 aattttataatagtatatattattgtgacaataaaaactaactagaatatataataataccaatttatcaggtacaagatttgcagagattgttttatag 14609139  T
Q  223 atgcccaaagcgatactggcatgtgtcccggttgtagagagccttacaaagtaggagaatacgaggatgat---caagattatgacaatgcagcactacc 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| ||||||||||||    
T  14609140 atgcccaaagcgatactggcatgtgtcccggttgtagagagccttacaaagtaggagaatacgaggatgataaccaagattatgacactgcagcactacc 14609239  T
Q  320 atta 323  Q
    ||||    
T  14609240 atta 14609243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 287
Target Start/End: Complemental strand, 14599420 - 14599289
Alignment:
Q  157 aaactaactagaatatataataataccaattt-atcaggtacaagatttgcagagattgttttatagatgcccaaagcgatactggcatgtgtcccggtt 255  Q
    |||||||| ||| || | |||||||||||||| ||||||||||||||||| |||||||||||||||||||| || |  || || |||| ||||||||| |    
T  14599420 aaactaacaagattacaaaataataccaattttatcaggtacaagatttgtagagattgttttatagatgcgcagaaagaaaccggcacgtgtcccggat 14599321  T
Q  256 gtagagagccttacaaagtaggagaatacgag 287  Q
    |||  ||||| | |||||||||||||||||||    
T  14599320 gtaaggagccattcaaagtaggagaatacgag 14599289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University