View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17061_low_35 (Length: 309)
Name: NF17061_low_35
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17061_low_35 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 55453365 - 55453667
Alignment:
| Q |
1 |
aaatgaatgttaatcaccctttgaatttgagcaaaagaaccaagctgatcaagcagtgaattttctattactagtagcaacatatatacctgaagataga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55453365 |
aaatgaatgttaatcaccctttgaatttgagcaaaagaaccaagctgatcaagcagtgaattttctattactagtagcaacatatatacctgaagataga |
55453464 |
T |
|
| Q |
101 |
accaagcctggattattgacacggctagggtccacaatacccgcaccatgttcaaaaggagtggagggatgcaaggtgttggcctcatagccttcggcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
55453465 |
accaagcctggattattgacacggctagggtccacaatgcccgcaccatgttcaaaaggagtggagggatgcaaggtgttggcctcgtagccttcggcca |
55453564 |
T |
|
| Q |
201 |
tcagaggatctccaagcttgtcatactttctgctggttgtggtgatcgcagatgctatcatagatggagtccatgacggattatgttgcttgatctgtgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
55453565 |
tcagaggatctccaagcttgtcatactttctgctggttgtggtgatcgcagatgctatcatagatggagtccatgatggattatgttgcttgatcagtgc |
55453664 |
T |
|
| Q |
301 |
tgc |
303 |
Q |
| |
|
||| |
|
|
| T |
55453665 |
tgc |
55453667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University