View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17061_low_37 (Length: 304)
Name: NF17061_low_37
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17061_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 40 - 290
Target Start/End: Complemental strand, 34788538 - 34788288
Alignment:
| Q |
40 |
gaggaacattagatatagctctctcataaacctccctagttctttccttattcccgacactctcttccaatcttatataatcaaaccacgaatcataatt |
139 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34788538 |
gaggtacattagctatagctctctcataaacctccctagttctttccttattcccgacactctcttccaatcttatataatcaaaccacaaatcataatt |
34788439 |
T |
|
| Q |
140 |
caatggatttttcataacttcatcttcatactgaaaccttctcttcccaacaatagcatcctcaatcccttccctatcaccattctgtttctcaaatgct |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34788438 |
caatggatttttcataacttcatcttcatactgaaaccttctcttcccaacaatagcatcctcaatcccttccctatcaccatactgtttctcaaatgct |
34788339 |
T |
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| Q |
240 |
acaaacttccgatacaaaacctcagccctccccttcggaatatgatcaagt |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788338 |
gcaaacttccgatacaaaacctcagccctccccttcggaatatgatcaagt |
34788288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 39 - 290
Target Start/End: Original strand, 2292655 - 2292906
Alignment:
| Q |
39 |
ggaggaacattagatatagctctctcataaacctccctagttctttccttattcccgacactctcttccaatcttatataatcaaaccacgaatcataat |
138 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2292655 |
ggaggaacattggctatagctctctcataaacctccctagttctttccttattcccaacactctcttccaatcttatataatcaaaccatgaatcataat |
2292754 |
T |
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| Q |
139 |
tcaatggatttttcataacttcatcttcatactgaaaccttctcttcccaacaatagcatcctcaatcccttccctatcaccattctgtttctcaaatgc |
238 |
Q |
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|||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2292755 |
tcaacggatttttcctcacttcatcttcatactgaaaccttctcttcccaacaatagcatcctcaatcccttccctatcaccatactgtttctcaaatgc |
2292854 |
T |
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| Q |
239 |
tacaaacttccgatacaaaacctcagccctccccttcggaatatgatcaagt |
290 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2292855 |
cacaaacttccgatacaaatcctcagccctccccttcggaatatgatcaagt |
2292906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 40 - 288
Target Start/End: Original strand, 2597808 - 2598055
Alignment:
| Q |
40 |
gaggaacattagatatagctctctcataaacctccctagttctttccttattcccgacactctcttccaatcttatataatcaaaccacgaatcataatt |
139 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||| |
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| T |
2597808 |
gaggaacattagctatagctctctcataaacctccatagttctttccttattcccgacactctctttccatcttatataatcaaaccat-aatcataatt |
2597906 |
T |
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| Q |
140 |
caatggatttttcataacttcatcttcatactgaaaccttctcttcccaacaatagcatcctcaatcccttccctatcaccattctgtttctcaaatgct |
239 |
Q |
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||| |||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2597907 |
caacagatttttcctcacttcatcttcatattgaaaccttctcttcccaacaatagcatcctcaatcccttccctatcaccatactgtttctcaaatgcc |
2598006 |
T |
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| Q |
240 |
acaaacttccgatacaaaacctcagccctccccttcggaatatgatcaa |
288 |
Q |
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||||| |||| ||||||| |||||||||||||||||||||||| ||||| |
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| T |
2598007 |
acaaatttcccatacaaatcctcagccctccccttcggaatataatcaa |
2598055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 49276411 - 49276540
Alignment:
| Q |
21 |
gaaatattttcctgatttggaggaacattagatatagctctctcataaacctccctagttctttccttattcccgacactctcttccaatcttatataat |
120 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| |||||||||| |||||| | |
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| T |
49276411 |
gaaatcttttcctgatttggaggaacattagatatagctctctcataaacctccctagttttttccttatcccctacactttcttccaatcgtatatatt |
49276510 |
T |
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| Q |
121 |
caaaccacgaatcataattcaatggatttt |
150 |
Q |
| |
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||||||| |||||||| || || ||||||| |
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| T |
49276511 |
caaaccaggaatcatagttgaaaggatttt |
49276540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 49279968 - 49280065
Alignment:
| Q |
21 |
gaaatattttcctgatttggaggaacattagatatagctctctcataaacctccctagttctttccttattcccgacactctcttccaatcttatata |
118 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||| ||||| |||||||||| |||||| |
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| T |
49279968 |
gaaatcttttcctgatttggaggaacattagatatagctctctcataaacctccctagttttttcctcatcccccacactttcttccaatcgtatata |
49280065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 39 - 210
Target Start/End: Complemental strand, 24602247 - 24602074
Alignment:
| Q |
39 |
ggaggaacattagatatagctctctcataaacctccctagttctttccttattcccgacactctcttccaatcttatata----atcaaaccacgaatca |
134 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||| | ||| |||||||||||| |||||||| |||||| ||||||| ||||||||| |||||| |
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| T |
24602247 |
ggaggaacattagctacagctctctcataaacctccttggttgtttccttattcctgacactct--tccaatattatatatataatcaaaccaagaatca |
24602150 |
T |
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| Q |
135 |
taattcaatggatttttcataacttcatcttcatactgaaaccttctcttcccaacaatagcatcctcaatccctt |
210 |
Q |
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|||||||| ||||| || | ||||||||| ||||||||||||||||||||||||||||||| | |||||||| |
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| T |
24602149 |
taattcaagcgatttatcctcgcttcatctttggactgaaaccttctcttcccaacaatagcatctttaatccctt |
24602074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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