View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17061_low_4 (Length: 637)

Name: NF17061_low_4
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17061_low_4
NF17061_low_4
[»] chr7 (13 HSPs)
chr7 (9-621)||(36935247-36935863)
chr7 (13-149)||(24680908-24681042)
chr7 (50-130)||(18111586-18111666)
chr7 (395-474)||(9254852-9254930)
chr7 (395-474)||(9315320-9315398)
chr7 (56-139)||(24532923-24533006)
chr7 (56-155)||(35586753-35586852)
chr7 (62-148)||(43079619-43079704)
chr7 (62-139)||(7295458-7295535)
chr7 (581-618)||(14722113-14722150)
chr7 (107-140)||(26904733-26904766)
chr7 (190-246)||(9255127-9255183)
chr7 (190-246)||(9315067-9315123)
[»] chr1 (5 HSPs)
chr1 (8-149)||(35848410-35848547)
chr1 (62-139)||(3919308-3919384)
chr1 (56-149)||(21433381-21433474)
chr1 (109-149)||(43755711-43755751)
chr1 (31-95)||(46100916-46100980)
[»] chr4 (5 HSPs)
chr4 (8-139)||(8810579-8810708)
chr4 (34-149)||(5249866-5249981)
chr4 (165-273)||(3613512-3613620)
chr4 (50-149)||(44257704-44257803)
chr4 (50-151)||(49584990-49585091)
[»] chr8 (7 HSPs)
chr8 (9-149)||(11584094-11584232)
chr8 (49-139)||(28756543-28756633)
chr8 (13-139)||(43420831-43420955)
chr8 (62-149)||(33605064-33605151)
chr8 (8-136)||(37663626-37663752)
chr8 (110-147)||(40517269-40517306)
chr8 (8-80)||(43421914-43421986)
[»] chr3 (10 HSPs)
chr3 (31-140)||(26772375-26772484)
chr3 (49-149)||(28920023-28920123)
chr3 (62-139)||(16139282-16139358)
chr3 (8-139)||(5393768-5393897)
chr3 (77-149)||(23377980-23378052)
chr3 (10-148)||(48309840-48309978)
chr3 (102-139)||(51230634-51230671)
chr3 (92-140)||(5972436-5972484)
chr3 (28-95)||(21306076-21306141)
chr3 (31-139)||(45186507-45186615)
[»] chr6 (3 HSPs)
chr6 (31-149)||(16337878-16337996)
chr6 (31-149)||(16368002-16368120)
chr6 (8-95)||(255056-255141)
[»] chr2 (3 HSPs)
chr2 (30-149)||(44050013-44050132)
chr2 (9-138)||(44996554-44996681)
chr2 (62-139)||(12784385-12784462)
[»] scaffold0002 (1 HSPs)
scaffold0002 (62-139)||(469624-469701)
[»] chr5 (4 HSPs)
chr5 (102-149)||(21012566-21012613)
chr5 (87-148)||(6940161-6940222)
chr5 (581-618)||(17602041-17602078)
chr5 (87-139)||(30420634-30420685)
[»] scaffold0003 (1 HSPs)
scaffold0003 (77-139)||(324050-324112)


Alignment Details
Target: chr7 (Bit Score: 538; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 9 - 621
Target Start/End: Original strand, 36935247 - 36935863
Alignment:
Q  9 caagaatatagaaagaaatatatatgtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtccc 108  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36935247 caagaatatagaaagaaatatatatgtattgacgcgaaaaccaaaacaatagtgagagaaaataagaacataatgaatgtatgagagggaagattgtccc 36935346  T
Q  109 aaaaattatcataaaatggttgcacaaatataacttctcttcattaaaccaacaagaaaaccataataaaatacttagtttaaatccaactgcacaaaca 208  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36935347 aaaaattatcataaaatgtttgcacaaatataacttctcttcattaaaccaacaagaaaaccataataaaatacttagtttaaatccaactgcacaaaca 36935446  T
Q  209 aaacttggattaaatgtttaaattccaaccaacaaaaaagtaaaccgtaagccataaacaataataattagtcttaaatccaaattaacaagatgggcag 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36935447 aaacttggattaaatgtttaaattccaaccaacaaaaaagtaaaccgtaagccataaacaataataattagtcttaaatccaaattaacaagatgggcag 36935546  T
Q  309 caccttgattgggtaacnnnnnnntaatctaaattaacagtgatgtttgatgcttggttggatgttgatcatgaaacc----nnnnnnncatcatcatca 404  Q
    |||||||||||||||||       ||||||||||||||| ||||||||||||||||||||||||||||||||||||||           |||||||||||    
T  36935547 caccttgattgggtaacaaaaaaataatctaaattaacaatgatgtttgatgcttggttggatgttgatcatgaaaccttttttttcttcatcatcatca 36935646  T
Q  405 tcatacacaagataattcaaatagaatataaatacacaaccatttttcattagaaaataaaaagattatgccaaggtgcaatcttactctaacttgcatg 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36935647 tcatacacaagataattcaaatagaatataaatacacaaccatttttcattagaaaataaaaagattatgccaaggtgcaatcttactctaacttgcatg 36935746  T
Q  505 aggtagtgattttaaaagctttctttgttcagattcatgcgtctagtgctcctagcataatgaggtattgtggcaacccccatccttaattgggtctagt 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36935747 aggtagtgattttaaaagctttctttgttcagattcatgcgtctagtgctcctagcataatgaggtattgtggcaacccccatccttaattgggtctagt 36935846  T
Q  605 gtaatattgatggtatt 621  Q
    |||||||||||||||||    
T  36935847 gtaatattgatggtatt 36935863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 24680908 - 24681042
Alignment:
Q  13 aatatagaaagaaatatatatgtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaa 112  Q
    ||||||||||||||| |||  || ||||| ||||| |||||| ||||   |||||||  ||| |||||||||||||||||||| || |||||||||||||    
T  24680908 aatatagaaagaaatgtat--gtcttgacacgaaaaccaaaacaataaaaagagaaagcaaggacataatgagtgtatgagagagaggattgtcccaaaa 24681005  T
Q  113 attatcataaaatggttgcacaaatataacttctctt 149  Q
     |||| | |||||||||  |||||||| | |||||||    
T  24681006 gttataagaaaatggttatacaaatatcatttctctt 24681042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 18111586 - 18111666
Alignment:
Q  50 caaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttg 130  Q
    |||| |||||| |||| ||| ||| || |||||| | ||||||||| ||| |||||| |||||||||| ||||||||||||    
T  18111586 caaagtaatagagagataaagtaaaaatataatgtgagtatgagagagaaaattgtcacaaaaattattataaaatggttg 18111666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 474
Target Start/End: Complemental strand, 9254930 - 9254852
Alignment:
Q  395 atcatcatcatcatacacaagataattcaaatagaatataaatacacaaccatttttcattagaaaataaaaagattatg 474  Q
    |||||| ||||| |||| |||| |||||||||  || |||||||||| ||||||| ||||||||||||| ||||| ||||    
T  9254930 atcatcttcatc-tacaaaagacaattcaaatgcaaaataaatacaccaccatttctcattagaaaatagaaagaatatg 9254852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 474
Target Start/End: Original strand, 9315320 - 9315398
Alignment:
Q  395 atcatcatcatcatacacaagataattcaaatagaatataaatacacaaccatttttcattagaaaataaaaagattatg 474  Q
    |||||| ||||| |||| |||| |||||||||  || |||||||||| ||||||| ||||||||||||| ||||| ||||    
T  9315320 atcatcttcatc-tacaaaagacaattcaaatgcaaaataaatacaccaccatttctcattagaaaatagaaagaatatg 9315398  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 24532923 - 24533006
Alignment:
Q  56 aatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatat 139  Q
    ||||| |||||||| ||| ||||||||| | |||||||||  || |||||| |||||||||||| ||||| ||||  |||||||    
T  24532923 aatagagagagaaagtaaaaacataatgtgagtatgagagaaaaaattgtcacaaaaattatcagaaaatagttgttcaaatat 24533006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 35586753 - 35586852
Alignment:
Q  56 aatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatataacttctcttcattaa 155  Q
    ||||| |||||||||| |||| || ||| | ||||||||| |||  ||||| ||||| |||||||||||||| ||  ||||||| | ||||||| |||||    
T  35586753 aatagagagagaaaatgagaatatgatgtgagtatgagagagaaagttgtcacaaaagttatcataaaatggatgttcaaatatcatttctctttattaa 35586852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 43079619 - 43079704
Alignment:
Q  62 gagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatataacttctct 148  Q
    |||||||| |||||| |||||| | ||||||||| |||  |||||| ||||||||||| ||| |||||| |||||||| | ||||||    
T  43079619 gagagaaagtaagaatataatgtgagtatgagagagaaagttgtcc-aaaaattatcacaaagtggttgtacaaatatcatttctct 43079704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 7295535 - 7295458
Alignment:
Q  62 gagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatat 139  Q
    |||||| |||||||| |||||| | ||||||||| |||  |||| ||||||||| |  ||||||||||| ||||||||    
T  7295535 gagagagaataagaatataatgtgagtatgagagagaaagttgttccaaaaattgtactaaaatggttgtacaaatat 7295458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 618
Target Start/End: Complemental strand, 14722150 - 14722113
Alignment:
Q  581 cccccatccttaattgggtctagtgtaatattgatggt 618  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  14722150 cccccatccttagttgggtcaagtgtaatattgatggt 14722113  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 140
Target Start/End: Original strand, 26904733 - 26904766
Alignment:
Q  107 ccaaaaattatcataaaatggttgcacaaatata 140  Q
    |||||||||||||||||||||||| |||||||||    
T  26904733 ccaaaaattatcataaaatggttgtacaaatata 26904766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 9255183 - 9255127
Alignment:
Q  190 aaatccaactgcacaaacaaaacttggattaaatgtttaaattccaaccaacaaaaa 246  Q
    ||||||||| || |||||||||||||||||  |||||||||| |  |||||||||||    
T  9255183 aaatccaacagctcaaacaaaacttggattttatgtttaaatccacaccaacaaaaa 9255127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 9315067 - 9315123
Alignment:
Q  190 aaatccaactgcacaaacaaaacttggattaaatgtttaaattccaaccaacaaaaa 246  Q
    ||||||||| || |||||||||||||||||  |||||||||| |  |||||||||||    
T  9315067 aaatccaacagctcaaacaaaacttggattttatgtttaaatccacaccaacaaaaa 9315123  T

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Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 35848547 - 35848410
Alignment:
Q  8 ccaagaatatagaaagaaatatatatgtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcc 107  Q
    |||||||||||||||||||| |||  || ||||| |||||  ||||| |||||  |||||||| |||  ||||||||||||||||||| || | ||||||    
T  35848547 ccaagaatatagaaagaaatgtat--gtcttgacacgaaaatcaaaacaatag--agagaaaacaagggcataatgagtgtatgagagagagggttgtcc 35848452  T
Q  108 caaaaattatcataaaatggttgcacaaatataacttctctt 149  Q
    |||||||||| | |||||||||| |||||||| | |||||||    
T  35848451 caaaaattataagaaaatggttgtacaaatatcatttctctt 35848410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 3919384 - 3919308
Alignment:
Q  62 gagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatat 139  Q
    |||||| |||||||| |||||| | ||||||||| |||  |||||| ||||||||| | |||||||||| ||||||||    
T  3919384 gagagagaataagaatataatgcgagtatgagagagaaagttgtcc-aaaaattataacaaaatggttgtacaaatat 3919308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 149
Target Start/End: Original strand, 21433381 - 21433474
Alignment:
Q  56 aatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatataacttctctt 149  Q
    ||||| |||||||||||| ||||||||| | |||| |||| |||  ||||| ||||| || | | |||||||||| |||||||| | |||||||    
T  21433381 aatagagagagaaaataaaaacataatgtgagtataagagagaaagttgtcacaaaagttgttacaaaatggttgtacaaatatcatttctctt 21433474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 43755711 - 43755751
Alignment:
Q  109 aaaaattatcataaaatggttgcacaaatataacttctctt 149  Q
    |||||||||||||||||||||| |||||||| | |||||||    
T  43755711 aaaaattatcataaaatggttgtacaaatatcatttctctt 43755751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 46100980 - 46100916
Alignment:
Q  31 tatgtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagag 95  Q
    ||||||||||| | ||| |||||| | |||||||||||||||| ||||| ||| | |||||||||    
T  46100980 tatgtattgacacaaaaaccaaaaaattagtgagagaaaataaaaacatgatgtgagtatgagag 46100916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 8810708 - 8810579
Alignment:
Q  8 ccaagaatatagaaagaaatatatatgtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcc 107  Q
    |||||||||||||||||||| ||||| |  |||| |||||  ||||| ||||| ||||||||  ||| |||||||||||||||||||| || | ||||||    
T  8810708 ccaagaatatagaaagaaatgtatatct--tgacacgaaaatcaaaacaatagagagagaaagcaaggacataatgagtgtatgagagagagggttgtcc 8810611  T
Q  108 caaaaattatcataaaatggttgcacaaatat 139  Q
    ||||| || | | |||||||||| ||||||||    
T  8810610 caaaagttgtaagaaaatggttgtacaaatat 8810579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 34 - 149
Target Start/End: Complemental strand, 5249981 - 5249866
Alignment:
Q  34 gtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcac 133  Q
    |||||||| ||||| |||||| ||||| |||||||| ||| ||||||||| | ||||||||| |||  ||||| ||||  || |||||||||||||||||    
T  5249981 gtattgacacgaaaaccaaaacaatagagagagaaagtaaaaacataatgtgagtatgagagagaaagttgtcacaaatgttgtcataaaatggttgcac 5249882  T
Q  134 aaatataacttctctt 149  Q
    |||||| | |||||||    
T  5249881 aaatatcatttctctt 5249866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 273
Target Start/End: Complemental strand, 3613620 - 3613512
Alignment:
Q  165 aaaaccataataaaatacttagtttaaatccaactgcacaaacaaaacttggattaaatgtttaaattccaaccaacaaaaaagtaaaccgtaagccata 264  Q
    |||||| ||| |||||| |  |||||||||||||  ||||||||||| ||||||| ||||||||||  |  |||||||||||||| ||  | |||| |||    
T  3613620 aaaaccttaacaaaatagtcggtttaaatccaacatcacaaacaaaaattggattcaatgtttaaacccacaccaacaaaaaagttaatagcaagcgata 3613521  T
Q  265 aacaataat 273  Q
    |||||||||    
T  3613520 aacaataat 3613512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 50 - 149
Target Start/End: Original strand, 44257704 - 44257803
Alignment:
Q  50 caaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatataacttctctt 149  Q
    ||||||||||| |||||||| ||| || |||||| | ||||||||| |||  ||||| |||||||| | | |||||| |||||||||||| | |||||||    
T  44257704 caaaataatagagagagaaagtaaaaatataatgtgagtatgagagagaaagttgtcacaaaaattgttagaaaatgattgcacaaatatcatttctctt 44257803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 50 - 151
Target Start/End: Complemental strand, 49585091 - 49584990
Alignment:
Q  50 caaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatataacttctctt 149  Q
    |||| |||||| |||||||| ||| || |||||| | ||||||||| |||  |||||||||||||||| | |||||||| | | |||||| | |||||||    
T  49585091 caaagtaatagagagagaaagtaaaaatataatgtgagtatgagagagaaagttgtcccaaaaattattagaaaatggtcgtagaaatatcatttctctt 49584992  T
Q  150 ca 151  Q
    ||    
T  49584991 ca 49584990  T

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Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 11584232 - 11584094
Alignment:
Q  9 caagaatatagaaagaaatatatatgtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtccc 108  Q
    ||||||||||||||||||| |||  || ||||| ||||| |||||| ||||| |||||||| ||| | |||||||||||||||| ||  | | ||||| |    
T  11584232 caagaatatagaaagaaatgtat--gttttgacacgaaaaccaaaacaatagagagagaaagtaatagcataatgagtgtatgaaagatagggttgtctc 11584135  T
Q  109 aaaaattatcataaaatggttgcacaaatataacttctctt 149  Q
    ||||||| | | |||||||||| |||||||| | |||||||    
T  11584134 aaaaattgtaagaaaatggttgtacaaatatcatttctctt 11584094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 139
Target Start/End: Complemental strand, 28756633 - 28756543
Alignment:
Q  49 ccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatat 139  Q
    |||||| ||||| |||| ||||||| || |||||| | |||||||||  || |||||| |||||||||| |||||||| ||||||||||||    
T  28756633 ccaaaacaatagagagaaaaaataaaaatataatgtgagtatgagagataaaattgtcacaaaaattattataaaatgattgcacaaatat 28756543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 43420831 - 43420955
Alignment:
Q  13 aatatagaaagaaatatatatgtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaaga-ttgtcccaaa 111  Q
    |||||||||| |||| ||||| |||| || | ||| ||||   ||||||||||||||||||||| ||||| ||| |||||||   || | |||||  |||    
T  43420831 aatatagaaaaaaatgtatatatattcacacaaaaaccaatgcaatagtgagagaaaataagaatataataagtttatgaga---aatagttgtctaaaa 43420927  T
Q  112 aattatcataaaatggttgcacaaatat 139  Q
    |||| |||||||||||||| ||||||||    
T  43420928 aattgtcataaaatggttgtacaaatat 43420955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 149
Target Start/End: Original strand, 33605064 - 33605151
Alignment:
Q  62 gagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatataacttctctt 149  Q
    |||||| | ||| |||| |||| | ||||||||| ||| ||||| |||||| |||||||||||||||||  ||||||| | |||||||    
T  33605064 gagagagagtaaaaacacaatgtgagtatgagagagaaaattgttccaaaagttatcataaaatggttgttcaaatatcatttctctt 33605151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 37663626 - 37663752
Alignment:
Q  8 ccaagaatatagaaagaaatatatatgtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcc 107  Q
    |||||||||||||||||||| ||||  | |||||  |||| |||||  ||||  |||||||| ||||| |||| | | |||||||||| || | ||||||    
T  37663626 ccaagaatatagaaagaaatgtata--tcttgacatgaaaaccaaagcaataaagagagaaagtaagagcatactaattgtatgagagagagggttgtcc 37663723  T
Q  108 caaaaattatcataaaatggttgcacaaa 136  Q
     ||||||| | | |||||||||| |||||    
T  37663724 taaaaattgtaacaaaatggttgtacaaa 37663752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 40517306 - 40517269
Alignment:
Q  110 aaaattatcataaaatggttgcacaaatataacttctc 147  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  40517306 aaaattatcataaaatggttgtacaaatataatttctc 40517269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 43421986 - 43421914
Alignment:
Q  8 ccaagaatatagaaagaaatatatatgtattgacgcgaaagccaaaataatagtgagagaaaataagaacata 80  Q
    |||| |||||||||| |||| ||||| |||| |  ||||| ||||   |||||||||||||||||||||||||    
T  43421986 ccaataatatagaaaaaaatgtatatatattcaaacgaaaaccaatgcaatagtgagagaaaataagaacata 43421914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 26772484 - 26772375
Alignment:
Q  31 tatgtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttg 130  Q
    ||||||||||| |||||  ||||||||||| |||||||||||| ||  ||||| |  |||||||| |||  ||||| |||||||||| ||||||||||||    
T  26772484 tatgtattgacacgaaaatcaaaataatagagagagaaaataaaaatgtaatgtgaatatgagagagaaagttgtcacaaaaattattataaaatggttg 26772385  T
Q  131 cacaaatata 140  Q
      ||||||||    
T  26772384 ttcaaatata 26772375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 149
Target Start/End: Original strand, 28920023 - 28920123
Alignment:
Q  49 ccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatataacttctct 148  Q
    |||||||||||| |||||||||||| ||| ||||  | ||||||||| |||  ||||| |||||||||| || |||| |||| |||||||| | ||||||    
T  28920023 ccaaaataatagagagagaaaataaaaacttaatatgagtatgagagagaaagttgtcacaaaaattattatcaaatagttgtacaaatatcatttctct 28920122  T
Q  149 t 149  Q
    |    
T  28920123 t 28920123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 62 - 139
Target Start/End: Original strand, 16139282 - 16139358
Alignment:
Q  62 gagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatat 139  Q
    |||||| |||||||| |||||| || |||||||| ||| ||||| | |||| ||||||||||||||||| ||||||||    
T  16139282 gagagagaataagaatataatgtgtttatgagagagaaaattgttc-aaaagttatcataaaatggttgtacaaatat 16139358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 5393768 - 5393897
Alignment:
Q  8 ccaagaatatagaaagaaatatatatgtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcc 107  Q
    |||||||||||||||||||| |||  || ||||| ||||| |||||  ||||  ||||||||  |||  |||||||||| |||||||| || | ||||||    
T  5393768 ccaagaatatagaaagaaatgtat--gtcttgacacgaaaaccaaagcaatacagagagaaagcaagggcataatgagtttatgagagagagggttgtcc 5393865  T
Q  108 caaaaattatcataaaatggttgcacaaatat 139  Q
    ||||| || | | |||||| ||| ||||||||    
T  5393866 caaaagttgtaagaaaatgattgtacaaatat 5393897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 23378052 - 23377980
Alignment:
Q  77 cataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatataacttctctt 149  Q
    ||||||||||||||||||| || | ||||| ||||| || | | ||||||||||||||||||| | |||||||    
T  23378052 cataatgagtgtatgagagagagggttgtctcaaaagttgtaagaaaatggttgcacaaatatcatttctctt 23377980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 48309978 - 48309840
Alignment:
Q  10 aagaatatagaaagaaatatatatgtattgacgcgaaagccaaaataatagtgagagaaaata--agaacataatgagtgtatgagagggaagattgtcc 107  Q
    ||||||||| |||||||| |||  || ||||| ||||| | |||| ||||| |||||| ||||  ||| |||||||| |||||  ||| || | ||||||    
T  48309978 aagaatataaaaagaaatgtat--gtcttgacacgaaaactaaaacaatagagagagagaatacaagagcataatgaatgtatacgagagatggttgtcc 48309881  T
Q  108 caaaaattatcataaaatggttgcacaaatataacttctct 148  Q
    |||||||||| | |||||  ||| |||||||||| ||||||    
T  48309880 caaaaattataagaaaattattgtacaaatataatttctct 48309840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 51230634 - 51230671
Alignment:
Q  102 ttgtcccaaaaattatcataaaatggttgcacaaatat 139  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  51230634 ttgtcgcaaaaattatcataaaatggttgtacaaatat 51230671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 5972436 - 5972484
Alignment:
Q  92 agagggaagattgtcccaaaaattatcataaaatggttgcacaaatata 140  Q
    ||||||||||||||||| |||||||||  |||||||| | |||||||||    
T  5972436 agagggaagattgtccctaaaattatcgcaaaatggtagtacaaatata 5972484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 21306141 - 21306076
Alignment:
Q  28 atatatgtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagag 95  Q
    |||||||||||||||||||| | |||||||||  ||||||||  || ||| |||| ||||||||||||    
T  21306141 atatatgtattgacgcgaaaactaaaataata--gagagaaaggaaaaacttaattagtgtatgagag 21306076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 45186507 - 45186615
Alignment:
Q  31 tatgtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttg 130  Q
    |||||||||||  ||||  |||| |||||| |||||||| ||| || |||||| | | ||||||| |||  ||||| |||||||| | | ||||||||||    
T  45186507 tatgtattgacaagaaaatcaaagtaatagagagagaaagtaaaaatataatgtgagcatgagagagaaagttgtcacaaaaattgttagaaaatggttg 45186606  T
Q  131 cacaaatat 139  Q
     ||||||||    
T  45186607 tacaaatat 45186615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 149
Target Start/End: Original strand, 16337878 - 16337996
Alignment:
Q  31 tatgtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttg 130  Q
    ||||||||||| ||||| |||| | |||||||||||||| ||| || |||||| | ||||||||| |||  ||||  ||||| |||| ||||||||||||    
T  16337878 tatgtattgacacgaaaaccaagacaatagtgagagaaagtaaaaatataatgtgagtatgagagagaaagttgttacaaaagttattataaaatggttg 16337977  T
Q  131 cacaaatataacttctctt 149  Q
     || ||||| | |||||||    
T  16337978 taccaatatcatttctctt 16337996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 149
Target Start/End: Original strand, 16368002 - 16368120
Alignment:
Q  31 tatgtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttg 130  Q
    ||||||||||| | ||| |||| | |||||||||||||| ||| || |||||| | ||||||||  |||  ||||  |||||||||| ||||||||||||    
T  16368002 tatgtattgacacaaaaaccaagacaatagtgagagaaagtaaaaatataatgtgagtatgagaaagaaagttgttacaaaaattattataaaatggttg 16368101  T
Q  131 cacaaatataacttctctt 149  Q
     |||||||| | |||||||    
T  16368102 tacaaatatcatttctctt 16368120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 255056 - 255141
Alignment:
Q  8 ccaagaatatagaaagaaatatatatgtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagag 95  Q
    |||| ||||||||||||| ||||  ||||||||| |||||  ||||  ||| | |||||||| |||| ||||||||| ||||||||||    
T  255056 ccaaaaatatagaaagaagtata--tgtattgacacgaaaatcaaagcaatggagagagaaagtaaggacataatgaatgtatgagag 255141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 44050132 - 44050013
Alignment:
Q  30 atatgtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggtt 129  Q
    |||||||||||| || || |||||  ||||  || ||||| ||| ||||||||| | ||||||||| |||| ||||| ||||| || |||||||||||||    
T  44050132 atatgtattgacacggaaaccaaagcaataaagaaagaaagtaaaaacataatgtgagtatgagagagaaggttgtcacaaaagttgtcataaaatggtt 44050033  T
Q  130 gcacaaatataacttctctt 149  Q
    | |||| ||| | |||||||    
T  44050032 gtacaagtatcatttctctt 44050013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 44996681 - 44996554
Alignment:
Q  9 caagaatatagaaagaaatatatatgtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtccc 108  Q
    ||||||||||||||||||| |||  || ||||| | ||| |||||  ||||| |||| |||| |||  |||||||||||||||||||  | | |||||||    
T  44996681 caagaatatagaaagaaatgtat--gtcttgacacaaaaaccaaagcaatagagagaaaaaacaagggcataatgagtgtatgagagaaagggttgtccc 44996584  T
Q  109 aaaaattatcataaaatggttgcacaaata 138  Q
    |||| || | | |||||||||| |||||||    
T  44996583 aaaagttgtaagaaaatggttgtacaaata 44996554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 139
Target Start/End: Original strand, 12784385 - 12784462
Alignment:
Q  62 gagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatat 139  Q
    |||||||| ||| || |||| | | ||||||||| |||  ||||| |||||||||| |||||||||||| ||||||||    
T  12784385 gagagaaagtaaaaatataacgtgagtatgagagagaaagttgtcacaaaaattattataaaatggttgtacaaatat 12784462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 62 - 139
Target Start/End: Original strand, 469624 - 469701
Alignment:
Q  62 gagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatat 139  Q
    |||||||| ||| ||||||||| | || |||||| |||  ||||| |||||||||||| |||||||||| ||||||||    
T  469624 gagagaaagtaataacataatgtgagtgtgagagagaaagttgtcacaaaaattatcaaaaaatggttgtacaaatat 469701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 21012613 - 21012566
Alignment:
Q  102 ttgtcccaaaaattatcataaaatggttgcacaaatataacttctctt 149  Q
    ||||| |||||||| |||||||||||||| |||||||||| |||||||    
T  21012613 ttgtcacaaaaattgtcataaaatggttgtacaaatataatttctctt 21012566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 6940161 - 6940222
Alignment:
Q  87 gtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatataacttctct 148  Q
    ||||||||| |||  ||||| |||||||||| |||||||||||| |||||||| | ||||||    
T  6940161 gtatgagagagaaagttgtcacaaaaattattataaaatggttgtacaaatatcatttctct 6940222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 618
Target Start/End: Original strand, 17602041 - 17602078
Alignment:
Q  581 cccccatccttaattgggtctagtgtaatattgatggt 618  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  17602041 cccccatccttagttgggtcaagtgtaatattgatggt 17602078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 30420685 - 30420634
Alignment:
Q  87 gtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatat 139  Q
    ||||||||| ||||||||| | ||||||||||||||||||| || ||||||||    
T  30420685 gtatgagagagaagattgtac-aaaaattatcataaaatggatgtacaaatat 30420634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 324112 - 324050
Alignment:
Q  77 cataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatat 139  Q
    |||||||| | |||||||| || |||||||||||||||||| | |||||||||  ||||||||    
T  324112 cataatgaatatatgagagagaggattgtcccaaaaattataagaaaatggttctacaaatat 324050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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