View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17061_low_42 (Length: 266)
Name: NF17061_low_42
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17061_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 10 - 205
Target Start/End: Original strand, 36792024 - 36792219
Alignment:
| Q |
10 |
tcatagggttgatatcatgcaacatcactatagaaaagtgttataccgaatacggcgtagtatatcactcgagaaaagtgaccacatgatgtaatatcac |
109 |
Q |
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| T |
36792024 |
tcatagggttgatatcatgcaacatcactatagaaaagtgttataccgaatacggtgtagtatatcactcgagaaaagtgaccacatgatgtaatatcat |
36792123 |
T |
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| Q |
110 |
ttaagagaaacacacctttatttgattcctggattcgcagtggattagactgatatcaaagaagaagaataagtttagagtctataggtatgcata |
205 |
Q |
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| T |
36792124 |
ttgagagaaacacacctttatttgattcctggattcgtagtggagtagactgatatcaaagaagaagaataagtttagagtctataggcatgcata |
36792219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 36793666 - 36793707
Alignment:
| Q |
209 |
ttacttgaatcacaaattgtactgactttggtgggtgtactg |
250 |
Q |
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| T |
36793666 |
ttacttgaatcacaaattgtactgactttggtgggtgtactg |
36793707 |
T |
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