View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17061_low_46 (Length: 248)
Name: NF17061_low_46
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17061_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 27105054 - 27105266
Alignment:
| Q |
17 |
gagtgtagtaaaaatcttaatccctcctttcattgatggatcatcattgtcaaatttattaggaggtgtaaaaatgctcatttccatggacgcaaacaag |
116 |
Q |
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| T |
27105054 |
gagtgtagtaaaaatcttaatccctcctttcatagatggatcatcattgtcaaatttattaggaggtgtaaaaatgctcatttccatggacgcaaacaag |
27105153 |
T |
|
| Q |
117 |
ttgcatggtgctggtactaaattcactgcttcatgcccaccaaaatctacatctccatcaagaaaacctaaatgtttccactctgtcagaaccgttactg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27105154 |
ttgcatggtgctggtactaaattcactgcttcatgcccaccaaaatctacatttccatcaagaaaacctaaatgtttccactctgtcagaaccgttactg |
27105253 |
T |
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| Q |
217 |
caccggtacttag |
229 |
Q |
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||||||||||||| |
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| T |
27105254 |
caccggtacttag |
27105266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 27098055 - 27098266
Alignment:
| Q |
17 |
gagtgtagtaaaaatcttaatccctcctttcattgatggatcatcattgtcaaatttattaggaggtgtaaaaatgctcatttccatggacgcaaacaag |
116 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| || |||||||||| | |
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| T |
27098055 |
gagtgtagtaaaaatcttaacccctcctttcattgatggatcatcattgtcaaatttattaggagatgtaaaaatgctaatttcaattgacgcaaacatg |
27098154 |
T |
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| Q |
117 |
ttgcatggtgctggtactaaattcactgcttcatgcccaccaaaatctacatctccatcaagaaaacctaaatgtttccactctgtcagaaccgttactg |
216 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27098155 |
ttgcatggtgctggtactaaattcactgcttcgttcccaccaaaatctacatttccatcaagaaaacctaaatgtttccactctgtcagaaccgttactg |
27098254 |
T |
|
| Q |
217 |
caccggtactta |
228 |
Q |
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|||| ||||||| |
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| T |
27098255 |
caccagtactta |
27098266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 221
Target Start/End: Original strand, 27045325 - 27045525
Alignment:
| Q |
24 |
gtaaaaatcttaatccctcctttcattgatggatcatcattgtcaaatttattaggaggtgtaaaaatgctcatttccatggacgcaaacaagttgcatg |
123 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||| |||| |||| ||||| || ||||||| | ||||| |||||||||| |||||||| |
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| T |
27045325 |
gtaaaaatcttaactcctcctttcattgatggatcatcatcatcaagtttaccaggagatgcgaaaatgcacccttccaaagacgcaaacatgttgcatg |
27045424 |
T |
|
| Q |
124 |
gtgctggtactaaattcactgcttcatgcccaccaaaatcta---catctccatcaagaaaacctaaatgtttccactctgtcagaaccgttactgcacc |
220 |
Q |
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|||||||||| |||||||||| ||||| ||| |||||||||| || | |||||| |||||||||||| |||||||| ||||||| |||||| ||||| |
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| T |
27045425 |
gtgctggtacaaaattcactgattcataccctccaaaatctatattattttcatcaacaaaacctaaatgcttccactcagtcagaatcgttaccgcacc |
27045524 |
T |
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| Q |
221 |
g |
221 |
Q |
| |
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| |
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| T |
27045525 |
g |
27045525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 220
Target Start/End: Original strand, 27069430 - 27069530
Alignment:
| Q |
117 |
ttgcatggtgctggtactaaattcactgcttcatgcccaccaaaatctacatctccatcaagaaaacctaaatgtttccactctgtcagaaccgttactg |
216 |
Q |
| |
|
||||| |||||||||||||||||||| |||||| || |||||||||| || | ||| ||||||| ||||| ||||||||||||| ||| ||||||| |
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| T |
27069430 |
ttgcacggtgctggtactaaattcacaacttcatagcctccaaaatctatattttcat---gaaaacccaaatgcttccactctgtcaaaactgttactg |
27069526 |
T |
|
| Q |
217 |
cacc |
220 |
Q |
| |
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|||| |
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|
| T |
27069527 |
cacc |
27069530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 27062421 - 27062463
Alignment:
| Q |
178 |
gaaaacctaaatgtttccactctgtcagaaccgttactgcacc |
220 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
27062421 |
gaaaacccaaatgtttccactctgttagaaccgttactgcacc |
27062463 |
T |
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