View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17061_low_47 (Length: 240)
Name: NF17061_low_47
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17061_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 31330449 - 31330245
Alignment:
| Q |
17 |
cacagaaaatcaaactcaaagcagagatcttaaagaattgaatcctagattgaatagtttgcataggaacaagctttatcgatactatagctacataact |
116 |
Q |
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| T |
31330449 |
cacagaaaatcaaactcaaagcagagatcttaaagaattgaaccctggatcgaatagtttgcataggaacaatcttcatccatgctatagcaacatagct |
31330350 |
T |
|
| Q |
117 |
aaataaagaacacgctatcatatgacacatggtaagaaaaatagggtacttgaaaccataagtgctgagcaagtacttgttcaatagaagaacaccaatg |
216 |
Q |
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||| |||||||||||| |||||||||||||||| ||||||||||| |||||||||||||| |||| | ||| ||||||||||||||||||||||||||| |
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| T |
31330349 |
aaacaaagaacacgctgtcatatgacacatggtgagaaaaataggatacttgaaaccatagttgcttaacaaatacttgttcaatagaagaacaccaatg |
31330250 |
T |
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| Q |
217 |
ttgga |
221 |
Q |
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||||| |
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| T |
31330249 |
ttgga |
31330245 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 225
Target Start/End: Original strand, 5780000 - 5780092
Alignment:
| Q |
133 |
atcatatgacacatggtaagaaaaatagggtacttgaaaccataagtgctgagcaagtacttgttcaatagaagaacaccaatgttggaagtg |
225 |
Q |
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| T |
5780000 |
atcatgtgacacatggtgaggaaaaccgggaacttgtaaccatagctgcttaacaagtacttgttcattagaagaacaccaatgtttgaagtg |
5780092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 35016253 - 35016212
Alignment:
| Q |
17 |
cacagaaaatcaaactcaaagcagagatcttaaagaattgaa |
58 |
Q |
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|||||||||| |||||||||| || ||||||||||||||||| |
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| T |
35016253 |
cacagaaaataaaactcaaagtagcgatcttaaagaattgaa |
35016212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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