View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17061_low_49 (Length: 239)

Name: NF17061_low_49
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17061_low_49
NF17061_low_49
[»] chr2 (12 HSPs)
chr2 (76-142)||(10491368-10491434)
chr2 (74-134)||(10505495-10505555)
chr2 (76-134)||(7483220-7483278)
chr2 (4-72)||(10492763-10492832)
chr2 (78-134)||(10462248-10462304)
chr2 (78-134)||(10471342-10471398)
chr2 (78-134)||(10543540-10543596)
chr2 (14-72)||(7476577-7476636)
chr2 (82-134)||(10516637-10516689)
chr2 (78-134)||(27966406-27966462)
chr2 (78-134)||(28106214-28106270)
chr2 (76-134)||(10486928-10486986)
[»] chr5 (1 HSPs)
chr5 (78-127)||(33601068-33601117)


Alignment Details
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 10491434 - 10491368
Alignment:
Q  76 tgcaactacttttggatggtgtgcttaactatttgtcgtgtccaactgaagctattaatgaggaaaa 142  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10491434 tgcaactacttttggatggtgtgcttaactatttgccgtgtccaactgaagctattaatgaggaaaa 10491368  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 10505555 - 10505495
Alignment:
Q  74 gttgcaactacttttggatggtgtgcttaactatttgtcgtgtccaactgaagctattaat 134  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||    
T  10505555 gttgcaactacttttggatggtgtgcttaattatttgccgtgtccaactgaagctagtaat 10505495  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 7483220 - 7483278
Alignment:
Q  76 tgcaactacttttggatggtgtgcttaactatttgtcgtgtccaactgaagctattaat 134  Q
    ||||||||||||| | ||||||||||||||||||| |||||||||||||||||| ||||    
T  7483220 tgcaactactttttgctggtgtgcttaactatttgccgtgtccaactgaagctagtaat 7483278  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 10492832 - 10492763
Alignment:
Q  4 gcaatttgtggggcaaccatagcacagaaatttgtgccggttttcat-ggtagcgcattcaagtataagg 72  Q
    |||||| || |||||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||    
T  10492832 gcaattcgtagggcaaccatagcacataaatttgtaccggttttcatgggtagtgcattcaagtataagg 10492763  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 10462304 - 10462248
Alignment:
Q  78 caactacttttggatggtgtgcttaactatttgtcgtgtccaactgaagctattaat 134  Q
    |||||| ||||||||||||| ||||| |||||| |||||||||||||||||||||||    
T  10462304 caactaattttggatggtgtacttaattatttgccgtgtccaactgaagctattaat 10462248  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 10471398 - 10471342
Alignment:
Q  78 caactacttttggatggtgtgcttaactatttgtcgtgtccaactgaagctattaat 134  Q
    |||||||||||||||||||| ||||| |||||| |||||||||||||||||| ||||    
T  10471398 caactacttttggatggtgtacttaattatttgccgtgtccaactgaagctagtaat 10471342  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 10543596 - 10543540
Alignment:
Q  78 caactacttttggatggtgtgcttaactatttgtcgtgtccaactgaagctattaat 134  Q
    |||||||||||||||||||| ||||| |||||| |||||||||||||||||| ||||    
T  10543596 caactacttttggatggtgtacttaattatttgccgtgtccaactgaagctagtaat 10543540  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 7476577 - 7476636
Alignment:
Q  14 gggcaaccatagcacagaaatttgtgccggttttcat-ggtagcgcattcaagtataagg 72  Q
    ||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||    
T  7476577 gggcaactatagcacagaaatttgtaccggttttcatgggtagtgcattcaagtataagg 7476636  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 10516689 - 10516637
Alignment:
Q  82 tacttttggatggtgtgcttaactatttgtcgtgtccaactgaagctattaat 134  Q
    |||||||||||||| | ||||| |||||| |||||||||||||||||| ||||    
T  10516689 tacttttggatggtctacttaattatttgccgtgtccaactgaagctagtaat 10516637  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 27966462 - 27966406
Alignment:
Q  78 caactacttttggatggtgtgcttaactatttgtcgtgtccaactgaagctattaat 134  Q
    ||||||||||||||||||||  |||| |||||| ||||||||| |||||||| ||||    
T  27966462 caactacttttggatggtgtaattaattatttgccgtgtccaattgaagctagtaat 27966406  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 28106214 - 28106270
Alignment:
Q  78 caactacttttggatggtgtgcttaactatttgtcgtgtccaactgaagctattaat 134  Q
    ||||||||||||||||||||  |||| |||||| ||||||||| |||||||| ||||    
T  28106214 caactacttttggatggtgtaattaattatttgccgtgtccaattgaagctagtaat 28106270  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 10486986 - 10486928
Alignment:
Q  76 tgcaactacttttggatggtgtgcttaactatttgtcgtgtccaactgaagctattaat 134  Q
    |||||||||||||||||||| ||| ||| ||||  |||||||||| |||||||| ||||    
T  10486986 tgcaactacttttggatggtatgcgtaagtattgttcgtgtccaattgaagctagtaat 10486928  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 33601117 - 33601068
Alignment:
Q  78 caactacttttggatggtgtgcttaactatttgtcgtgtccaactgaagc 127  Q
    |||| |||||||||||||||||||||  ||||| ||||||||||||||||    
T  33601117 caaccacttttggatggtgtgcttaataatttgccgtgtccaactgaagc 33601068  T

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