View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17061_low_56 (Length: 222)
Name: NF17061_low_56
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17061_low_56 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 31 - 206
Target Start/End: Original strand, 30833760 - 30833935
Alignment:
| Q |
31 |
aaaaaataattatgtattgtcttatcagataaaagtagagaagaatacaaatagaaaaacactaatattagctctattgcatgcattcttatgagatgca |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30833760 |
aaaaaataattatgtattgtcttatcagataaaagtagagaagaatacaaatagaaaaacactaatattagctctattgcatgcattcttatgagatgca |
30833859 |
T |
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| Q |
131 |
aaactcttaaaatttgtataagaatggaaagaaataaatgtggtacccaaaatgtctcatagcatcaactacaaaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30833860 |
aaactcttaaaatttgtataagaatggaaagaaataaatgtggtacacaaaatgtctcatagcatcaactacaaaa |
30833935 |
T |
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Target: chr8 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 95 - 206
Target Start/End: Original strand, 3191524 - 3191635
Alignment:
| Q |
95 |
atattagctctattgcatgcattcttatgagatgcaaaactcttaaaatttgtataagaatggaaagaaataaatgtggtacccaaaatgtctcatagca |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
3191524 |
atattagctctattgcatgcattcttatgagatgcaaaactcttaaaatttgtataagaatggaaagaaataaatgtggtacacaaaatgtctcataaca |
3191623 |
T |
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| Q |
195 |
tcaactacaaaa |
206 |
Q |
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|||||||||||| |
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| T |
3191624 |
tcaactacaaaa |
3191635 |
T |
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