View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17061_low_57 (Length: 220)
Name: NF17061_low_57
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17061_low_57 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 204
Target Start/End: Complemental strand, 8697311 - 8697119
Alignment:
| Q |
12 |
gagaagaaagcaacactcacatagctggtatgtaatctcattttcttaaattcttttttgttagtatacgtaactggtacatcccataatccgcagtgat |
111 |
Q |
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| T |
8697311 |
gagaagaaagcaacactcacatagctggtatgtaatctcattttcttaaattcttttttgttagtatacgtaactggtacatcccataatccgcagtgat |
8697212 |
T |
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| Q |
112 |
gtctttttctgtaagttagtagtttctttttgggctacctgcatggtgattattgaacgatgaaagttagtacaacaaaacgtaagaaaaagt |
204 |
Q |
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| T |
8697211 |
gtctttttctgtaagttagtagtttctttttgggctacctgcatggtgattattgaacgatgaaagttagtacaacaaaaagtaagaaaaagt |
8697119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 12 - 204
Target Start/End: Complemental strand, 41307412 - 41307220
Alignment:
| Q |
12 |
gagaagaaagcaacactcacatagctggtatgtaatctcattttcttaaattcttttttgttagtatacgtaactggtacatcccataatccgcagtgat |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41307412 |
gagaagaaagcaacactcacatagctggtatgtaatctcattttcttaaattcttttttgttagtatacgtaactggtacatcccgtaatccgcagtgat |
41307313 |
T |
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| Q |
112 |
gtctttttctgtaagttagtagtttctttttgggctacctgcatggtgattattgaacgatgaaagttagtacaacaaaacgtaagaaaaagt |
204 |
Q |
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| T |
41307312 |
gtctttttctgtaaattagtagtttctttttgagctacctgcatggtgattattgaacgatgaaagttagtacaacaaaaagtaagaaaaagt |
41307220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 38805825 - 38806017
Alignment:
| Q |
12 |
gagaagaaagcaacactcacatagctggtatgtaatctcattttcttaaattcttttttgttagtatacgtaactggtacatcccataatccgcagtgat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38805825 |
gagaagaaagcaacactcacatagctggtatgtaatctcattttcttaaattcttttttgttagtatacgtaactggtacatcccataatccgcagtgat |
38805924 |
T |
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| Q |
112 |
gtctttttctgtaagttagtagtttctttttgggctacctgcatggtgattattgaacgatgaaagttagtacaacaaaacgtaagaaaaagt |
204 |
Q |
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| T |
38805925 |
gtctttttctgtaagttagtagtttctttttggactacctgcatggtgattattgaacgatgaaagttagtacaacaaaaagtaagaaaaagt |
38806017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 101 - 204
Target Start/End: Complemental strand, 19796209 - 19796109
Alignment:
| Q |
101 |
tccgcagtgatgtctttttctgtaagttagtagtttctttttgggctacctgcatggtgattattgaacgatgaaagttagtacaacaaaacgtaagaaa |
200 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
19796209 |
tccgcagtgatgtcgttttctgtaagttagt---ttctttttgggctacctgcatggtgattattgaacgatgaacgttagtacaacaaaaagtaagaaa |
19796113 |
T |
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| Q |
201 |
aagt |
204 |
Q |
| |
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|||| |
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| T |
19796112 |
aagt |
19796109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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