View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17061_low_6 (Length: 597)

Name: NF17061_low_6
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17061_low_6
NF17061_low_6
[»] chr4 (32 HSPs)
chr4 (17-579)||(48871158-48871720)
chr4 (17-579)||(48876462-48877024)
chr4 (11-579)||(48886844-48887412)
chr4 (402-579)||(37826281-37826456)
chr4 (429-579)||(7237065-7237212)
chr4 (472-562)||(48899355-48899445)
chr4 (184-306)||(48146951-48147069)
chr4 (121-266)||(48864854-48864998)
chr4 (429-573)||(7790678-7790820)
chr4 (473-579)||(48155780-48155886)
chr4 (429-573)||(7771993-7772135)
chr4 (185-266)||(48170202-48170283)
chr4 (162-394)||(37826079-37826308)
chr4 (126-335)||(45371122-45371326)
chr4 (516-579)||(45365620-45365683)
chr4 (470-533)||(50669726-50669789)
chr4 (470-533)||(50673454-50673517)
chr4 (477-579)||(7801235-7801336)
chr4 (181-266)||(48155594-48155679)
chr4 (429-529)||(49038198-49038296)
chr4 (471-522)||(48864684-48864735)
chr4 (477-579)||(7823567-7823668)
chr4 (242-299)||(48167417-48167474)
chr4 (436-579)||(45371393-45371534)
chr4 (516-560)||(45384290-45384334)
chr4 (328-384)||(48864779-48864835)
chr4 (536-579)||(7908894-7908937)
chr4 (477-579)||(7814075-7814176)
chr4 (474-551)||(50666932-50667010)
chr4 (169-202)||(7772912-7772945)
chr4 (181-218)||(48864171-48864208)
chr4 (223-284)||(49038053-49038113)
[»] chr8 (6 HSPs)
chr8 (87-287)||(15349743-15349930)
chr8 (322-579)||(15349487-15349746)
chr8 (471-579)||(4030143-4030251)
chr8 (471-579)||(4961876-4961984)
chr8 (471-520)||(12195978-12196027)
chr8 (471-520)||(12440406-12440455)
[»] chr5 (5 HSPs)
chr5 (471-579)||(9120361-9120472)
chr5 (420-544)||(29696872-29696994)
chr5 (419-560)||(29688746-29688882)
chr5 (130-230)||(9120640-9120740)
chr5 (275-394)||(29688872-29688992)
[»] chr2 (1 HSPs)
chr2 (419-579)||(29351020-29351172)
[»] chr7 (1 HSPs)
chr7 (419-560)||(48884460-48884600)
[»] chr1 (6 HSPs)
chr1 (512-579)||(24341009-24341076)
chr1 (512-579)||(24353374-24353441)
chr1 (167-218)||(24311106-24311157)
chr1 (162-218)||(24341318-24341374)
chr1 (162-218)||(24353683-24353739)
chr1 (136-204)||(24367996-24368064)
[»] chr3 (3 HSPs)
chr3 (419-579)||(11014805-11014957)
chr3 (327-393)||(11005184-11005250)
chr3 (327-393)||(11023754-11023820)
[»] chr6 (2 HSPs)
chr6 (472-521)||(21979001-21979051)
chr6 (522-579)||(21016419-21016476)


Alignment Details
Target: chr4 (Bit Score: 531; Significance: 0; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 17 - 579
Target Start/End: Complemental strand, 48871720 - 48871158
Alignment:
Q  17 aatgacaacaaacgtagttattagtgaccaccaaaatcagagaacaaacagaacctttttgtttgtgatttcaaatttttaaagaagcgctttgagtcaa 116  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48871720 aatgataacaaacgtagttattagtgacccccaaaatcagagaacaaacagaacctttttgtttgtgatttcaaatttttaaagaagcgctttgagtcaa 48871621  T
Q  117 agtggtgtaattgtgattttgatcttgtttaacatgaaaaaatttatcaaactaatttaccatgtaaaacaatttcaagcagtgaccaaaacatacatta 216  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48871620 agtggtgtaattgtgattttgatcttgtttaacatgcaaaaatttatcaaactaatttaccatgtaaaacaatttcaagcagtgaccaaaacatacatta 48871521  T
Q  217 gagctcaatccaattatacattcacaaataacattgaatcacacagacaattaaagttgtcaacattttcaataaacatattataaatagctaagcaata 316  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48871520 gagctcaatccaattacacattcacaaataacattgaatcacacagacaattaaagttgtcaacattttcaataaacatattataaatagctaagcaata 48871421  T
Q  317 aacagttcataacatattaaataagcacatgtggtatactgaatcatattacaaatgcaatcaaacacgtattaccctcatatgcataaatggattcaaa 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  48871420 aacagttcataacatattaaataagcacatgtggtatactgaatcatattacaaatgcaatcaaacacgtattaccctcatatgcaaaaatggaatcaaa 48871321  T
Q  417 gtcatattaccctacaaatgcagacacccaacagtacataattcaatataatgttataaatatcaagaaaatggtgaaggagaataattcaaatcctcat 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48871320 gtcatattaccctacaaatgcagacacccaacagtacataattcaatataatgttataaatatcaagaaaatggtgaaggagaataattcaaaacctcat 48871221  T
Q  517 tcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagact 579  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  48871220 tcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaaagcaaagact 48871158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 17 - 579
Target Start/End: Complemental strand, 48877024 - 48876462
Alignment:
Q  17 aatgacaacaaacgtagttattagtgaccaccaaaatcagagaacaaacagaacctttttgtttgtgatttcaaatttttaaagaagcgctttgagtcaa 116  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48877024 aatgataacaaacgtagttattagtgacccccaaaatcagagaacaaacagaacctttttgtttgtgatttcaaatttttaaagaagcgctttgagtcaa 48876925  T
Q  117 agtggtgtaattgtgattttgatcttgtttaacatgaaaaaatttatcaaactaatttaccatgtaaaacaatttcaagcagtgaccaaaacatacatta 216  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48876924 agtggtgtaattgtgattttgatcttgtttaacatgcaaaaatttatcaaactaatttaccatgtaaaacaatttcaagcagtgaccaaaacatacatta 48876825  T
Q  217 gagctcaatccaattatacattcacaaataacattgaatcacacagacaattaaagttgtcaacattttcaataaacatattataaatagctaagcaata 316  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48876824 gagctcaatccaattacacattcacaaataacattgaatcacacagacaattaaagttgtcaacattttcaataaacatattataaatagctaagcaata 48876725  T
Q  317 aacagttcataacatattaaataagcacatgtggtatactgaatcatattacaaatgcaatcaaacacgtattaccctcatatgcataaatggattcaaa 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  48876724 aacagttcataacatattaaataagcacatgtggtatactgaatcatattacaaatgcaatcaaacacgtattaccctcatatgcaaaaatggaatcaaa 48876625  T
Q  417 gtcatattaccctacaaatgcagacacccaacagtacataattcaatataatgttataaatatcaagaaaatggtgaaggagaataattcaaatcctcat 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48876624 gtcatattaccctacaaatgcagacacccaacagtacataattcaatataatgttataaatatcaagaaaatggtgaaggagaataattcaaaacctcat 48876525  T
Q  517 tcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagact 579  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  48876524 tcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaaagcaaagact 48876462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 11 - 579
Target Start/End: Complemental strand, 48887412 - 48886844
Alignment:
Q  11 caaaggaatgacaacaaacgtagttattagtgaccaccaaaatcagagaacaaacagaacctttttgtttgtgatttcaaatttttaaagaagcgctttg 110  Q
    ||||| |||||||||||||| ||||||||||||  |||| |||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  48887412 caaagaaatgacaacaaacgaagttattagtgaaaaccacaatcagggaacaaacagaacctttttgtttctggtttcaaatttttaaagaagcgctttg 48887313  T
Q  111 agtcaaagtggtgtaattgtgattttgatcttgtttaacatgaaaaaatttatcaaactaatttaccatgtaaaacaatttcaagcagtgaccaaaacat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  48887312 agtcaaagtggtgtaattgtgattttgatcttgtttaacatgctaaaattcatcaaactaatttaccatgaaaaacaatttcaagcagtgaccaaaacat 48887213  T
Q  211 acattagagctcaatccaattatacattcacaaataacattgaatcacacagacaattaaagttgtcaacattttcaataaacatattataaatagctaa 310  Q
     ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  48887212 gcattagagctcaatccaattacacattcacaaataacattgaatcacacagacaattaaagttgtcaacattttcaataaacatataataaacagctaa 48887113  T
Q  311 gcaataaacagttcataacatattaaataagcacatgtggtatactgaatcatattacaaatgcaatcaaacacgtattaccctcatatgcataaatgga 410  Q
    ||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||    
T  48887112 gcaattaacagttcataacatattaaataagctcatgcggtatactgaatcatattacaaatgcaatcaaacacatgataccctcatatgcataaatgga 48887013  T
Q  411 ttcaaagtcatattaccctacaaatgcagacacccaacagtacataattcaatataatgttataaatatcaagaaaatggtgaaggagaataattcaaat 510  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  48887012 atcaaagtcatattaccctacaaatgcagacacccaacagtacataattcaatataatgttataaatatcaagaaaatggtgaaggagaataattcaaaa 48886913  T
Q  511 cctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagact 579  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  48886912 cctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaaagcaaagact 48886844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 402 - 579
Target Start/End: Original strand, 37826281 - 37826456
Alignment:
Q  402 ataaatggattcaaagtcatattaccctacaaatgcagacacccaacagtacataattcaatataatgttataaatatcaagaaaatggtgaaggagaat 501  Q
    ||||||| | |||||  ||||||||||||||||| ||||||||||| ||| |||||| |||||||||  |  ||||||||||||||||||||||||||||    
T  37826281 ataaatgtagtcaaacacatattaccctacaaatccagacacccaagagttcataatacaatataat--tgaaaatatcaagaaaatggtgaaggagaat 37826378  T
Q  502 aattcaaatcctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagact 579  Q
    | ||  || ||||||||||||||||||| ||| |||||||||| |||||   |||| || ||| |||||||| |||||    
T  37826379 attttgaaacctcattcttcttgtttgtatcatcttcttaaacttgctctccgtcaacagggaatgaaagcagagact 37826456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 429 - 579
Target Start/End: Original strand, 7237065 - 7237212
Alignment:
Q  429 tacaaatgcagacacccaacagtacataattcaatataatgttataaatatcaagaaaatggtgaaggagaataattcaaatcctcattcttcttgtttg 528  Q
    ||||||||||  || |||| |||||||||  |||||||||  ||||||||| |||||||   |||||||||||| |||| | | ||||| ||||||||||    
T  7237065 tacaaatgcaaccaaccaagagtacataaaacaatataat--tataaatataaagaaaacaatgaaggagaatatttcacaacatcattgttcttgtttg 7237162  T
Q  529 tgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagact 579  Q
    ||||| ||| |||| | |||||||||||||||||||||||||||| |||||    
T  7237163 tgtcatctt-ttaagcatgctcattgtcaccaaggagtgaaagcagagact 7237212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 472 - 562
Target Start/End: Complemental strand, 48899445 - 48899355
Alignment:
Q  472 ataaatatcaagaaaatggtgaaggagaataattcaaatcctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaag 562  Q
    |||||||||||||||||||| |||||||||| |||||| |||| |||||||||||| ||||| |||| ||  |||||| ||||||||||||    
T  48899445 ataaatatcaagaaaatggtaaaggagaatatttcaaaacctccttcttcttgtttatgtcatcttcctatgcctgctaattgtcaccaag 48899355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 184 - 306
Target Start/End: Original strand, 48146951 - 48147069
Alignment:
Q  184 aacaatttcaagcagtgaccaaaacatacattagagctcaatccaattatacattcacaaataacattgaatcacacagacaattaaagttgtcaacatt 283  Q
    |||||||||| |||||||||| ||||||||||||| ||||||||| ||| |||| || |||||||| |||||||| || ||    |||||||||||||||    
T  48146951 aacaatttcaggcagtgaccacaacatacattagaactcaatccagttacacatgcataaataacactgaatcacgcaaac----aaagttgtcaacatt 48147046  T
Q  284 ttcaataaacatattataaatag 306  Q
    | ||| ||||||| || ||||||    
T  48147047 tccaagaaacatactacaaatag 48147069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 121 - 266
Target Start/End: Complemental strand, 48864998 - 48864854
Alignment:
Q  121 gtgtaattgtgattttgatcttgtttaacatgaaaaaatttatcaaactaatttaccatgtaaaacaatttcaagcagtgaccaaaacatacattagagc 220  Q
    ||||||||||||||||||||||| | |||||| ||| ||| | |||| ||| |||| || ||||||||||||||||||  | || ||||||||||||| |    
T  48864998 gtgtaattgtgattttgatcttgatcaacatgcaaacattcagcaaa-taaattacaatataaaacaatttcaagcagcaaacagaacatacattagaac 48864900  T
Q  221 tcaatccaattatacattcacaaataacattgaatcacacagacaa 266  Q
     ||||||| ||| |||| || |||||||| ||| ||||||| ||||    
T  48864899 ccaatccagttacacatgcataaataacaatgattcacacaaacaa 48864854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 429 - 573
Target Start/End: Complemental strand, 7790820 - 7790678
Alignment:
Q  429 tacaaatgcagacacccaacagtacataattcaatataatgttataaatatcaagaaaatggtgaaggagaataattcaaatcctcattcttcttgtttg 528  Q
    ||||||||||| ||||||| |||||||||  |||||||||  ||||||||| |||||||   ||||| |||||| ||   |  |||||| || |||||||    
T  7790820 tacaaatgcagccacccaagagtacataaaacaatataat--tataaatataaagaaaacaatgaagaagaatatttatcaaactcattgtttttgtttg 7790723  T
Q  529 tgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagca 573  Q
    || || |||||||| | ||||||||||||||||| ||||||||||    
T  7790722 tgacatcttcttaatcatgctcattgtcaccaagtagtgaaagca 7790678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 473 - 579
Target Start/End: Original strand, 48155780 - 48155886
Alignment:
Q  473 taaatatcaagaaaatggtgaaggagaataattcaaatcctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagc 572  Q
    |||||||||||||||| |||||||| | || || ||  ||||||||||||||||||||    |||||||  | ||| ||||||||||| |||||||||||    
T  48155780 taaatatcaagaaaattgtgaaggatagtattttaatacctcattcttcttgtttgtgatgtcttcttaggcttgcacattgtcaccagggagtgaaagc 48155879  T
Q  573 aaagact 579  Q
    |||||||    
T  48155880 aaagact 48155886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 429 - 573
Target Start/End: Complemental strand, 7772135 - 7771993
Alignment:
Q  429 tacaaatgcagacacccaacagtacataattcaatataatgttataaatatcaagaaaatggtgaaggagaataattcaaatcctcattcttcttgtttg 528  Q
    ||||||||||| ||||||| |||||||||  |||||||||  |||||| || |||||||   ||||| |||||| |||  |  || ||| || |||||||    
T  7772135 tacaaatgcagccacccaagagtacataaaacaatataat--tataaagataaagaaaacaatgaagaagaatatttctcaaactgattgtttttgtttg 7772038  T
Q  529 tgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagca 573  Q
    || || |||||||| | ||||||||||||||||| ||||||||||    
T  7772037 tgacatcttcttaatcatgctcattgtcaccaagtagtgaaagca 7771993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 266
Target Start/End: Original strand, 48170202 - 48170283
Alignment:
Q  185 acaatttcaagcagtgaccaaaacatacattagagctcaatccaattatacattcacaaataacattgaatcacacagacaa 266  Q
    |||||||| ||||||||||| ||||||||||||  ||||||||| ||| |||| || |||||||| ||||||||||| ||||    
T  48170202 acaatttctagcagtgaccacaacatacattagcactcaatccagttacacatgcataaataacagtgaatcacacaaacaa 48170283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 162 - 394
Target Start/End: Original strand, 37826079 - 37826308
Alignment:
Q  162 atcaaactaatttaccatgtaaaacaatttcaagcagtgaccaaaacatac-attagagctcaatccaattatacattcacaaataacattgaatcacac 260  Q
    |||||| ||||||||||| |||||| ||||||  ||||||| ||||||||| |||||| ||||||||||||| | || || |||||||| ||||    ||    
T  37826079 atcaaattaatttaccatataaaaccatttcagacagtgacaaaaacatacaattagaactcaatccaattacatatgcataaataacaatgaa----ac 37826174  T
Q  261 agacaattaaagttgtcaacattttcaataaacatattataaatagctaagcaataaacagttcataacatattaaataagcacatgtggtatactgaat 360  Q
    | | ||| |||  |||||| ||||  ||||| ||||||  ||| || ||| ||||||||| ||||| | ||||| ||| ||| ||| ||| |||||   |    
T  37826175 acataatcaaaactgtcaatatttgtaataagcatattccaaacagttaaccaataaacatttcatgaaatattgaatcagctcatatggcatactatct 37826274  T
Q  361 catattacaaatgcaatcaaacacgtattaccct 394  Q
    ||| ||| ||||| | |||||||| |||||||||    
T  37826275 catgttataaatgtagtcaaacacatattaccct 37826308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 126 - 335
Target Start/End: Original strand, 45371122 - 45371326
Alignment:
Q  126 attgtgattttgatcttgtttaacatgaaaaaatttatcaaactaatttaccatgtaaaacaatttcaagcagtgaccaaaacatacattagagctcaat 225  Q
    |||||||| ||||||||| | |||||| | ||||| || ||| ||| ||||  | |||||||||||| | |||||| || ||||||||||||| ||||||    
T  45371122 attgtgatcttgatcttgatcaacatgcataaattcataaaa-taaattacattataaaacaatttctaacagtgatcacaacatacattagaactcaat 45371220  T
Q  226 ccaattatacattcacaaataacattgaatcacacagacaattaaagttgtcaacattttcaataaacatattataaatagctaagcaataaacagttca 325  Q
    |||| || |||| || |||||| | ||||||||||| ||    | |||||||||  ||| ||| || ||||||| ||| |  ||| ||||||||| ||||    
T  45371221 ccaactacacatgcataaataaaagtgaatcacacaaac----agagttgtcaaagtttccaagaagcatattacaaacaattaatcaataaacatttca 45371316  T
Q  326 taacatatta 335  Q
    | ||||||||    
T  45371317 tgacatatta 45371326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 516 - 579
Target Start/End: Original strand, 45365620 - 45365683
Alignment:
Q  516 ttcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagact 579  Q
    |||||||||||||||||| |||||||| | ||||||||||||||| | ||||| ||||||||||    
T  45365620 ttcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcaaagact 45365683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 470 - 533
Target Start/End: Complemental strand, 50669789 - 50669726
Alignment:
Q  470 ttataaatatcaagaaaatggtgaaggagaataattcaaatcctcattcttcttgtttgtgtca 533  Q
    |||||||||| || ||||||||||||||||||| |||||| |||  ||||||||||||||||||    
T  50669789 ttataaatataaataaaatggtgaaggagaatatttcaaaaccttgttcttcttgtttgtgtca 50669726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 470 - 533
Target Start/End: Complemental strand, 50673517 - 50673454
Alignment:
Q  470 ttataaatatcaagaaaatggtgaaggagaataattcaaatcctcattcttcttgtttgtgtca 533  Q
    |||||||||||||||||||||||||||| |||| || ||| ||||||||||| |||||| ||||    
T  50673517 ttataaatatcaagaaaatggtgaaggaaaatattttaaaacctcattcttcatgtttgagtca 50673454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 477 - 579
Target Start/End: Complemental strand, 7801336 - 7801235
Alignment:
Q  477 tatcaagaaaatggtgaaggagaataattcaaatcctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaag 576  Q
    |||||||||||||||||| ||  ||| ||||   ||||||| ||||||||| ||||| |||||||||| | ||||||||| ||| |||||||||||| ||    
T  7801336 tatcaagaaaatggtgaatgatgatatttcagtacctcatt-ttcttgtttttgtcatcttcttaaacttactcattgtccccagggagtgaaagcagag 7801238  T
Q  577 act 579  Q
    |||    
T  7801237 act 7801235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 48155594 - 48155679
Alignment:
Q  181 taaaacaatttcaagcagtgaccaaaacatacattagagctcaatccaattatacattcacaaataacattgaatcacacagacaa 266  Q
    ||||||||||||||||| |||||| ||||||||||||| ||||||||| | | ||||  | ||||| || ||||||||||| ||||    
T  48155594 taaaacaatttcaagcaatgaccacaacatacattagaactcaatccagtgacacatgtataaatatcagtgaatcacacaaacaa 48155679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 429 - 529
Target Start/End: Original strand, 49038198 - 49038296
Alignment:
Q  429 tacaaatgcagacacccaacagtacataattcaatataatgttataaatatcaagaaaatggtgaaggagaataattcaaatcctcattcttcttgtttg 528  Q
    ||||||||||| |||| || ||||||||||  | ||||  | |||||||||||||||||||||||||  ||||| |||| | |||| |||||||||||||    
T  49038198 tacaaatgcagccacctaagagtacataataaagtata--gctataaatatcaagaaaatggtgaagaggaatatttcataacctcgttcttcttgtttg 49038295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 471 - 522
Target Start/End: Complemental strand, 48864735 - 48864684
Alignment:
Q  471 tataaatatcaagaaaatggtgaaggagaataattcaaatcctcattcttct 522  Q
    |||||||||||||||||| ||||||||||||| |||| | ||||||||||||    
T  48864735 tataaatatcaagaaaatagtgaaggagaatatttcacaacctcattcttct 48864684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 477 - 579
Target Start/End: Complemental strand, 7823668 - 7823567
Alignment:
Q  477 tatcaagaaaatggtgaaggagaataattcaaatcctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaag 576  Q
    |||||| ||||||||||| ||  ||| ||||   ||||||| ||||||||| ||||| |||||||||| | ||||||||| ||| |||||||||||| ||    
T  7823668 tatcaataaaatggtgaatgatgatatttcagtacctcatt-ttcttgtttttgtcatcttcttaaacttactcattgtccccagggagtgaaagcagag 7823570  T
Q  577 act 579  Q
    |||    
T  7823569 act 7823567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 242 - 299
Target Start/End: Original strand, 48167417 - 48167474
Alignment:
Q  242 aaataacattgaatcacacagacaattaaagttgtcaacattttcaataaacatatta 299  Q
    |||| ||| ||||||||||||||| ||||||||||||| |||| ||| ||||||||||    
T  48167417 aaattacagtgaatcacacagacatttaaagttgtcaatatttccaacaaacatatta 48167474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 579
Target Start/End: Original strand, 45371393 - 45371534
Alignment:
Q  436 gcagacacccaacagtacataattcaatataatgttataaatatcaagaaaatggtgaaggagaataattcaaatcctcattcttcttgtttgtgtcacc 535  Q
    |||| ||||||| |||||||||| ||| |||||  ||||||| |||||||||| | |||||  |||| || | | |||||||| |||||| |||| || |    
T  45371393 gcagccacccaagagtacataatacaacataat--tataaatttcaagaaaatagggaagggtaatattttacaacctcattcatcttgtctgtgccatc 45371490  T
Q  536 ttcttaaacctgctcattgtcaccaaggagtgaaagcaaagact 579  Q
    ||||||| | || |||||||| | |  ||||||||||| |||||    
T  45371491 ttcttaagcttgatcattgtcgctagagagtgaaagcagagact 45371534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 516 - 560
Target Start/End: Original strand, 45384290 - 45384334
Alignment:
Q  516 ttcttcttgtttgtgtcaccttcttaaacctgctcattgtcacca 560  Q
    |||||||||||||||||| |||||||| | |||||||||||||||    
T  45384290 ttcttcttgtttgtgtcatcttcttaagcttgctcattgtcacca 45384334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 48864835 - 48864779
Alignment:
Q  328 acatattaaataagcacatgtggtatactgaatcatattacaaatgcaatcaaacac 384  Q
    |||||||| || ||| ||||||||||||||| |||||||||||||||| | ||||||    
T  48864835 acatattacattagctcatgtggtatactgactcatattacaaatgcatttaaacac 48864779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 579
Target Start/End: Complemental strand, 7908937 - 7908894
Alignment:
Q  536 ttcttaaacctgctcattgtcaccaaggagtgaaagcaaagact 579  Q
    ||||||||| ||||||||||||||| |||||||||||| |||||    
T  7908937 ttcttaaacttgctcattgtcaccagggagtgaaagcagagact 7908894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 477 - 579
Target Start/End: Complemental strand, 7814176 - 7814075
Alignment:
Q  477 tatcaagaaaatggtgaaggagaataattcaaatcctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaag 576  Q
    |||||| ||||||||||| ||  ||| ||||   ||||||| ||||| ||| ||||| |||||||||| | ||||||||| ||| |||||||||||| ||    
T  7814176 tatcaataaaatggtgaatgatgatatttcagtacctcatt-ttcttttttttgtcatcttcttaaacttactcattgtccccagggagtgaaagcagag 7814078  T
Q  577 act 579  Q
    |||    
T  7814077 act 7814075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 50667010 - 50666932
Alignment:
Q  474 aaatatcaagaaaatggtgaaggagaataattcaaatcct-cattcttcttgtttgtgtcaccttcttaaacctgctca 551  Q
    ||||||||| ||||| ||||||||||||| |||| | ||| |||||||||||||| ||| |  ||||||||| ||||||    
T  50667010 aaatatcaataaaatagtgaaggagaatatttcacaacctgcattcttcttgtttatgtgattttcttaaacttgctca 50666932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 202
Target Start/End: Original strand, 7772912 - 7772945
Alignment:
Q  169 taatttaccatgtaaaacaatttcaagcagtgac 202  Q
    ||||||||||| ||||||||||||||||||||||    
T  7772912 taatttaccatataaaacaatttcaagcagtgac 7772945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 48864208 - 48864171
Alignment:
Q  181 taaaacaatttcaagcagtgaccaaaacatacattaga 218  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  48864208 taaaacaatttcaagcagtgaccacaacattcattaga 48864171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 49038053 - 49038113
Alignment:
Q  223 aatccaattatacattcacaaataacattgaatcacacagacaattaaagttgtcaacattt 284  Q
    |||||||||| |||| || |||||||||  | ||||||| ||||||||||||||||||||||    
T  49038053 aatccaattacacatgcataaataacatata-tcacacaaacaattaaagttgtcaacattt 49038113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 2e-54; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 87 - 287
Target Start/End: Complemental strand, 15349930 - 15349743
Alignment:
Q  87 tcaaatttttaaagaagcgctttgagtcaaagtggtgtaattgtgattttgatcttgtttaacatgaaaaaatttatcaaactaatttaccatgtaaaac 186  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||| ||||| | |||||||||||||||||| ||||||    
T  15349930 tcaaatttttaaagaagcgcctcgagtcaaagtggtgtaattgtgattttgatcttgtttaatatgcaaaaactcatcaaactaatttaccatataaaac 15349831  T
Q  187 aatttcaagcagtgaccaaaacatacattagagctcaatccaattatacattcacaaataacattgaatcacacagacaattaaagttgtcaacattttc 286  Q
     ||||||| ||| |||||||||||             ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15349830 gatttcaaacagcgaccaaaacat-------------atccaattacacattcacaaataacgttgaatcacacagacaattaaagttgtcaacattttc 15349744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 322 - 579
Target Start/End: Complemental strand, 15349746 - 15349487
Alignment:
Q  322 ttcataacatattaaataagcacatgtggtatactgaatcatattacaaatgcaatcaaacacgtattaccctcatatgcataaatggattcaaagtcat 421  Q
    |||||||||||||  |||||| |||| || ||||||||||||| ||||||| ||||||||||| |||||||| || ||||| ||||| |  |||||||||    
T  15349746 ttcataacatattgcataagctcatgcggcatactgaatcatactacaaattcaatcaaacacatattacccacaaatgcagaaatgcaagcaaagtcat 15349647  T
Q  422 atta-----ccctacaaatgcagacacccaacagtacataattcaatataatgttataaatatcaagaaaatggtgaaggagaataattcaaatcctcat 516  Q
    |  |     |||||||||||||| || ||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||| | ||| |||||     
T  15349646 acgatacgaccctacaaatgcagtcatccaacagtacataatacaatataattttataaatatcaataaaatggtgaaggagaataactgaaaacctca- 15349548  T
Q  517 tcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagact 579  Q
      |||||||||| |||  | |||||| |||||||||| |||||| |||||||||||| |||||    
T  15349547 --ttcttgtttgcgtcgtcctcttaagcctgctcattatcaccagggagtgaaagcagagact 15349487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 471 - 579
Target Start/End: Original strand, 4030143 - 4030251
Alignment:
Q  471 tataaatatcaagaaaatggtgaaggagaataattcaaatcctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaa 570  Q
    ||||| |||||||||||| ||||| || |||| ||||||  ||||||||||||||||| |||| |||||||| | |||||||||| |||| |||||||||    
T  4030143 tataattatcaagaaaatagtgaaagataatacttcaaaaactcattcttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaa 4030242  T
Q  571 gcaaagact 579  Q
    ||| |||||    
T  4030243 gcagagact 4030251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 471 - 579
Target Start/End: Original strand, 4961876 - 4961984
Alignment:
Q  471 tataaatatcaagaaaatggtgaaggagaataattcaaatcctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaa 570  Q
    |||||||||||||||||||||||| ||||||| |||||| ||| ||||||||| ||| ||||| |||| ||||| |||||   |||| || || ||||||    
T  4961876 tataaatatcaagaaaatggtgaatgagaatatttcaaaacctgattcttcttatttatgtcatcttcataaacttgctcgaggtcaacatggggtgaaa 4961975  T
Q  571 gcaaagact 579  Q
    |||||||||    
T  4961976 gcaaagact 4961984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 471 - 520
Target Start/End: Complemental strand, 12196027 - 12195978
Alignment:
Q  471 tataaatatcaagaaaatggtgaaggagaataattcaaatcctcattctt 520  Q
    |||||||||||||||||||  ||||||||||| |||||| ||||||||||    
T  12196027 tataaatatcaagaaaatgaagaaggagaatatttcaaaacctcattctt 12195978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 471 - 520
Target Start/End: Complemental strand, 12440455 - 12440406
Alignment:
Q  471 tataaatatcaagaaaatggtgaaggagaataattcaaatcctcattctt 520  Q
    |||||||||||||||||||  ||||||||||| |||||| ||||||||||    
T  12440455 tataaatatcaagaaaatgaagaaggagaatatttcaaaacctcattctt 12440406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 471 - 579
Target Start/End: Complemental strand, 9120472 - 9120361
Alignment:
Q  471 tataaatatcaagaaaatggtgaaggagaataattcaaatcctcattct---tcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtg 567  Q
    |||||| ||||||||||||||||||||||||| |||||| |||||||||   |||||||||||||| || ||||| | || |||||||||||| ||||||    
T  9120472 tataaaaatcaagaaaatggtgaaggagaatatttcaaaacctcattcttcttcttgtttgtgtcatctccttaagcttgttcattgtcaccagggagtg 9120373  T
Q  568 aaagcaaagact 579  Q
    |||||| |||||    
T  9120372 aaagcagagact 9120361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 420 - 544
Target Start/End: Complemental strand, 29696994 - 29696872
Alignment:
Q  420 atattaccctacaaatgcagacacccaacagtacataattcaatataatgttataaatatcaagaaaatggtgaaggagaataattcaaatcctcattct 519  Q
    ||||||||||||||||||||  || ||| ||| |||||| |||||||||  |||||| |||| ||||||||||||| |||||| |||||| |||||||||    
T  29696994 atattaccctacaaatgcagctactcaagagtccataatacaatataat--tataaagatcatgaaaatggtgaagaagaatacttcaaaacctcattct 29696897  T
Q  520 tcttgtttgtgtcaccttcttaaac 544  Q
    ||||| || ||||| ||||||||||    
T  29696896 tcttggttctgtcatcttcttaaac 29696872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 419 - 560
Target Start/End: Complemental strand, 29688882 - 29688746
Alignment:
Q  419 catattaccctacaaatgcagacacccaacagtacataattcaatataatgttataaatatcaagaaaatggtgaaggagaataattcaaatcctcattc 518  Q
    ||||||||||||| ||||||| ||| ||| |||||||||| | |||||||  |||||| |||| |||||||||||||| ||||| || ||| |||||       
T  29688882 catattaccctacgaatgcagccactcaagagtacataatactatataat--tataaagatcatgaaaatggtgaaggggaatacttgaaaacctca--- 29688788  T
Q  519 ttcttgtttgtgtcaccttcttaaacctgctcattgtcacca 560  Q
    ||||||| || |||| |||||||| |||| ||| ||||||||    
T  29688787 ttcttgtctgcgtcatcttcttaagcctgatcactgtcacca 29688746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 9120740 - 9120640
Alignment:
Q  130 tgattttgatcttgtttaacatgaaaaaatttatcaaactaatttaccatgtaaaacaatttcaagcagtgaccaaaacatacattagagctcaatccaa 229  Q
    |||||||||||||| || ||||| | ||| | || | ||||||||||||  |||||||||||||||||||  ||| | ||||||| ||| ||||||||||    
T  9120740 tgattttgatcttgattgacatgcataaactcatgagactaatttaccaaataaaacaatttcaagcagttgccacatcatacatcagaactcaatccaa 9120641  T
Q  230 t 230  Q
    |    
T  9120640 t 9120640  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 394
Target Start/End: Complemental strand, 29688992 - 29688872
Alignment:
Q  275 gtcaacattttcaataaacatattataaatagctaagcaataaacagttcataacatattaaataagcacatgtggtatact-gaatcatattacaaatg 373  Q
    |||||||||||||||||||| | || ||||   | | ||||||||| ||||| |||||||  || ||| ||| ||  ||||| | |||||||||||||||    
T  29688992 gtcaacattttcaataaacacaatacaaatgtttgaccaataaacatttcatgacatatttcatcagctcatttgccatacttggatcatattacaaatg 29688893  T
Q  374 caatcaaacacgtattaccct 394  Q
    ||||||||||| |||||||||    
T  29688892 caatcaaacacatattaccct 29688872  T

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Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 419 - 579
Target Start/End: Complemental strand, 29351172 - 29351020
Alignment:
Q  419 catattaccctacaaatgcagacacccaacagtacataattcaatataatgttataaatatcaagaaaatggtgaaggagaataattcaaatcctcattc 518  Q
    |||| |||||||||||||||  ||||||| ||| |||||| |||||||||        |||||||||||| ||||| || |||| |||| | ||||||||    
T  29351172 catagtaccctacaaatgcaaccacccaagagttcataatacaatataat--------tatcaagaaaatagtgaaagataatatttcacaacctcattc 29351081  T
Q  519 ttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagact 579  Q
    |||||||||| |||| |||||||| | ||||||||||||||  |||||||||||| |||||    
T  29351080 ttcttgtttgagtcatcttcttaagcttgctcattgtcaccggggagtgaaagcatagact 29351020  T

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Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 419 - 560
Target Start/End: Complemental strand, 48884600 - 48884460
Alignment:
Q  419 catattaccctacaaatgcagacacccaacagtacataattcaatataatgttataaatatcaagaaaatggtgaaggagaataattcaaatcct-catt 517  Q
    |||||||| |||||||||||| |||| || ||| |||||| |||||||  |||||||||||||||||||   |||| ||||||| || | | |||  |||    
T  48884600 catattactctacaaatgcagccaccaaagagttcataatgcaatata--gttataaatatcaagaaaacaatgaaagagaatattttataacctgtatt 48884503  T
Q  518 cttcttgtttgtgtcaccttcttaaacctgctcattgtcacca 560  Q
    ||||||||||||||||  ||||||||| | |||||||||||||    
T  48884502 cttcttgtttgtgtcattttcttaaactttctcattgtcacca 48884460  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 512 - 579
Target Start/End: Complemental strand, 24341076 - 24341009
Alignment:
Q  512 ctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagact 579  Q
    ||||||||||||||||||| || |||||||| | | ||||||||||| | ||||||||||||||||||    
T  24341076 ctcattcttcttgtttgtgccatcttcttaagcttcctcattgtcactagggagtgaaagcaaagact 24341009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 512 - 579
Target Start/End: Complemental strand, 24353441 - 24353374
Alignment:
Q  512 ctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagact 579  Q
    ||||||||||||||||||| || |||||||| | | ||||||||||| | ||||||||||||||||||    
T  24353441 ctcattcttcttgtttgtgccatcttcttaagcttcctcattgtcactagggagtgaaagcaaagact 24353374  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 24311157 - 24311106
Alignment:
Q  167 actaatttaccatgtaaaacaatttcaagcagtgaccaaaacatacattaga 218  Q
    ||||||||||||||||||| ||||||||||||||| || ||||| |||||||    
T  24311157 actaatttaccatgtaaaataatttcaagcagtgaacacaacatgcattaga 24311106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 24341374 - 24341318
Alignment:
Q  162 atcaaactaatttaccatgtaaaacaatttcaagcagtgaccaaaacatacattaga 218  Q
    |||| ||||||||||||| || ||||||||||||| |||| || |||||||||||||    
T  24341374 atcagactaatttaccatatagaacaatttcaagctgtgaacacaacatacattaga 24341318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 24353739 - 24353683
Alignment:
Q  162 atcaaactaatttaccatgtaaaacaatttcaagcagtgaccaaaacatacattaga 218  Q
    |||| ||||||||||||| || ||||||||||||| |||| || |||||||||||||    
T  24353739 atcagactaatttaccatatagaacaatttcaagctgtgaacacaacatacattaga 24353683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 24368064 - 24367996
Alignment:
Q  136 tgatcttgtttaacatgaaaaaatttatcaaactaatttaccatgtaaaacaatttcaagcagtgacca 204  Q
    |||||||| | |||||| | ||| | |||||||||||||||||| ||||||||||||||  ||||||||    
T  24368064 tgatcttgatcaacatggataaactcatcaaactaatttaccatataaaacaatttcaaatagtgacca 24367996  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 419 - 579
Target Start/End: Original strand, 11014805 - 11014957
Alignment:
Q  419 catattaccctacaaatgcagacacccaacagtacataattcaatataatgttataaatatcaagaaaatggtgaaggagaataattcaaatcctcattc 518  Q
    |||||||||| |||||||||| ||||||| |||  |||||  ||||||||  |||||||||||||||   | ||||| |||||  |||| | ||||||||    
T  11014805 catattacccaacaaatgcagccacccaagagtttataatataatataat--tataaatatcaagaa---gttgaagaagaatgcttcacaacctcattc 11014899  T
Q  519 ttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagact 579  Q
    ||||| | |||||||   |||||||  ||| || |||||||| |||||||||||| |||||    
T  11014900 ttcttctctgtgtca---tcttaaaattgcccactgtcaccagggagtgaaagcagagact 11014957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 393
Target Start/End: Original strand, 11005184 - 11005250
Alignment:
Q  327 aacatattaaataagcacatgtggtatactgaatcatattacaaatgcaatcaaacacgtattaccc 393  Q
    ||||||||| || ||| ||||||| |||||| |||||||||||||  ||||| ||||| ||||||||    
T  11005184 aacatattacattagctcatgtggcatactggatcatattacaaacacaatcgaacacatattaccc 11005250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 393
Target Start/End: Original strand, 11023754 - 11023820
Alignment:
Q  327 aacatattaaataagcacatgtggtatactgaatcatattacaaatgcaatcaaacacgtattaccc 393  Q
    |||||| || || ||| ||||||| |||||| |||||||||||||  ||||||||||| ||||||||    
T  11023754 aacatagtacattagctcatgtggcatactggatcatattacaaacacaatcaaacacatattaccc 11023820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 521
Target Start/End: Original strand, 21979001 - 21979051
Alignment:
Q  472 ataaatatcaagaaaatggtgaagg-agaataattcaaatcctcattcttc 521  Q
    |||||||| |||||||||||||||| |||||| |||||| |||||||||||    
T  21979001 ataaatattaagaaaatggtgaaggaagaatatttcaaaacctcattcttc 21979051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 579
Target Start/End: Complemental strand, 21016476 - 21016419
Alignment:
Q  522 ttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagact 579  Q
    |||||||||||| |||||||| | || || |||||| || ||||||||||||||||||    
T  21016476 ttgtttgtgtcatcttcttaatcttggtcgttgtcatcagggagtgaaagcaaagact 21016419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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