View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17061_low_7 (Length: 595)
Name: NF17061_low_7
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17061_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Original strand, 2176527 - 2177114
Alignment:
| Q |
1 |
agatatcaaattagcatttctctgttcttgcaaaatgtgtagacaatatatacaatagtgtagtccaagtacttttggaactcccaa-gactcacacaga |
99 |
Q |
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| T |
2176527 |
agatatcaaattagcatttctctgttcttgcaaaatgtgtagacaatatatacaatagtgtagtccaagtacttttgggactcccaaagactcacaagga |
2176626 |
T |
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| Q |
100 |
aacacactaacactgcataccgtgttctacggtgtctcgaaccaaatacatttgactttttgaatattttttcttatatttcattctagagaggctatat |
199 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2176627 |
aacacactaacactggataccgtgttctacggtgtctcgaaccaaatacatttgactttttgaatattttttcttatatttcattctagagaggttatat |
2176726 |
T |
|
| Q |
200 |
gttggttcaagttgacagaatggtaactcggtccattgggagtgctataagctcagaagcaacatccttgaatggaagaactcc---ttctttgcattta |
296 |
Q |
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| T |
2176727 |
gttggttcaagttgacagaatggtaactcggtccattgggagtgctataagttcagaagcaacatccttgaatggaagaactcctccttctttgcattta |
2176826 |
T |
|
| Q |
297 |
aattttgacagtaacttagctgcttcttcctttgtcatcttcaccttcactctagtaacattcatcctttctctttctcctaataattcatcaatataat |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2176827 |
aattttgacagtaacttagctgcttcttcctttgtcatctttaccttcactctagtaacattcatcctttctctttctcctaataattcatcaatataat |
2176926 |
T |
|
| Q |
397 |
tactaccacagcttcttcttcctttcatcaactcatccttttcatcttgttctgaatccgcaaaacgaacacttttcctaactccctttcttgttagggg |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
2176927 |
tactaccacagcttcttcttcctttcatcaactcatccttttcatcttgttctgaatccgcaaaccgaacacttttcctaactgcctttcttgttagggg |
2177026 |
T |
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| Q |
497 |
agagatgatctttttattgcctacctcatctttgtaggttattgcctttgtgtctttgaattttgcttctaatttttcatatgatatt |
584 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2177027 |
agatatgatctttttattgcctacctcatctttgtaggttattgcctttgtgtctttgaattttgctgctaatttttcatatgatatt |
2177114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 170
Target Start/End: Complemental strand, 31846152 - 31846124
Alignment:
| Q |
142 |
caaatacatttgactttttgaatattttt |
170 |
Q |
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| T |
31846152 |
caaatacatttgactttttgaatattttt |
31846124 |
T |
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