View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17061_low_8 (Length: 585)
Name: NF17061_low_8
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17061_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 110 - 509
Target Start/End: Complemental strand, 7320802 - 7320397
Alignment:
| Q |
110 |
caagatacaattatgaaataaatttgagagaagagagaaaagaaatttttctactacttttgtattgtagttttggtttaccaaaggtgtaaacaagatg |
209 |
Q |
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| T |
7320802 |
caagatacaattatgaaataaatttgagagaagagagaaaataaatttttctactacttt-gtattgtagttttggtttaccaaaggtgtaaacaagatg |
7320704 |
T |
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| Q |
210 |
agaatatatgtgatcttggcactaactagacttgaatgagtgttagatattagtatcgnnnnnnnggtacaaaaatattagtacttttataatatgcata |
309 |
Q |
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| T |
7320703 |
agaatatatgtgatcttggcactaactagacttgaatcagtgttagatattagtatcttttttttggtacaaaaatattagtatttttgtaatatgcata |
7320604 |
T |
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| Q |
310 |
ta-nnnnnnnctgtaatttcatatatattttaaatttcccct-nnnnnnnntatatattttaaacgtcatgtctatatctaaatttaata--ttttttgg |
405 |
Q |
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| T |
7320603 |
tattttttttctgtaatttcatatatattttaaatttcccctcaaaaaaaatatatatgttaaatctcatgtctatatctaaatttaatatcttttttgg |
7320504 |
T |
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| Q |
406 |
ctctacgaatttaatattattggtgt---ttttatgtaggtgtaatgcatattatatgtattgagggggcaaaatattataagcctttaacgaaaagttg |
502 |
Q |
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| T |
7320503 |
ctttacgaatttaatattattggtttgtattttatggagacgtaatgcatattatatctattgagggggcaaaatattataagcctttaacgaaaagttg |
7320404 |
T |
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| Q |
503 |
tgatgcg |
509 |
Q |
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| T |
7320403 |
tgatgcg |
7320397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 7320900 - 7320843
Alignment:
| Q |
12 |
atgaaacaaaaacaaatcataactacactaaagaaaagtgaaagtgcaagaattgcaa |
69 |
Q |
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| T |
7320900 |
atgaaacaaaaacaaatcataactacactaaagaaaagtgaaagtgcaagaattgcaa |
7320843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 538 - 570
Target Start/End: Complemental strand, 7320368 - 7320336
Alignment:
| Q |
538 |
aagtgcaatgcgctaattgtagtatcgttcttg |
570 |
Q |
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| T |
7320368 |
aagtgcaatgcgctaattgtagtatcgttcttg |
7320336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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