View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17061_low_9 (Length: 542)
Name: NF17061_low_9
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17061_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 271 - 482
Target Start/End: Original strand, 1943721 - 1943932
Alignment:
| Q |
271 |
tgtcacctgaatgcgcataagaagatcatcgctgtgtttgtgggaaaagcgattattacgaaaattttgacgaacggattcgatatcggcgagatcttgt |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1943721 |
tgtcacctgaatgcgcataagaagatcatcgctgtgtttgtgggagaagcgattattacgaaaattttgacgaacggattcgatatcggcgagatcttgt |
1943820 |
T |
|
| Q |
371 |
ggcgatccggagttaggatcgaactcccaaagttgtctaccgacgtgattgtttaatgtacgaagccatggactgcctccttctgcaactttcagtttcc |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1943821 |
ggcgatccggagttaggatcgaactcccaaagttgtctaccgacgtgattgtttaatgtacgaagccatggactgcctccttctgcaactttcagtttcc |
1943920 |
T |
|
| Q |
471 |
acatttttcttt |
482 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1943921 |
acatttttcttt |
1943932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 23 - 222
Target Start/End: Original strand, 1943470 - 1943669
Alignment:
| Q |
23 |
agaagcataggaccagcataatcaccaggccaatgtccatcatgactctgaagagttgaatagaaattcaaagcccttcttaatgttgttgtcacactct |
122 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1943470 |
agaaacataggaccagcataatcaccaggccaatgtccatcatgactctgaagagttgaatagaaattcaaagcccttcttaatgttgttgtcacactct |
1943569 |
T |
|
| Q |
123 |
cttcattgacatcttcaacatctttcactctcactttgggtatcacttccttcatcggattctctttcgcaaactacataacaaatacaatacactgtca |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1943570 |
cttcattgacatcttcaacatctttcactctcactttgggtatcacttccttcatcggattctctttcgcaaactacataacaaatacaatacactgtca |
1943669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University