View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17062_low_1 (Length: 506)
Name: NF17062_low_1
Description: NF17062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17062_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 28 - 486
Target Start/End: Complemental strand, 43328000 - 43327545
Alignment:
| Q |
28 |
gacatgatggtcgacgtctacgtgcactgtcacatggtctgacatgtcatgccatgtcatacgggctaattaattcttgnnnnnnnaaattgnnnnnnnn |
127 |
Q |
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| T |
43328000 |
gacatgatggtcgacgtctacgtgcactgccacatggtctgacatgtcatgccacgtcatacgggctaattaattcctgtttttttaaattgaaaaaaaa |
43327901 |
T |
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| Q |
128 |
tggannnnnnncgtgcctatgagcaaatatctctcaaatttcacacttacgcgcaaaatacctattgaaattgnnnnnnntcaagtaaattggtccatgt |
227 |
Q |
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| T |
43327900 |
tggatttttttcgttcctatgagcaaatatctctcaaatttcacacttacgcgcaaaatacctattgaaattgacaaaaatcaagtaaattggtccaagt |
43327801 |
T |
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| Q |
228 |
ggcgtacaatttttcttgtgctttaaaggatttggtgtaaggatttaatccttatgatgagtagcagtaaattggagaagaatgatatagactgtatcga |
327 |
Q |
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| T |
43327800 |
ggcgtacaatttttcttttgctttaaaggattttgtgtaaggatttaatccttatga---gtagcagtaaattggagaagaatgatatagactgtatcga |
43327704 |
T |
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| Q |
328 |
atgtacttaaatgaattacaatgaaaaggaaaattgtgtgtgtcagatgttatggtatagtagcatgatccacattaagcaatactttcttaacttttcc |
427 |
Q |
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| T |
43327703 |
atgtacttgaaggaattacaatgaaaaggaaaattgtgtgtgtcagatgttatggtatagtagcatgatccacattaagcaatactttcttaacttttcc |
43327604 |
T |
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| Q |
428 |
atcatctgcaccagcaagcactcctttcttagtagcataattcaacaatatgatgcaag |
486 |
Q |
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| T |
43327603 |
atcatctgcaccagcaagcattcctttcttagtagcataattcaacaatatgatgcaag |
43327545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 334
Target Start/End: Original strand, 43327126 - 43327206
Alignment:
| Q |
251 |
taaaggatttggtgtaaggatttaatccttatgatgagtagcagtaaattggagaagaatgatatagactgtatcgaatgtact |
334 |
Q |
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| T |
43327126 |
taaaggatttggtgtaagggtttgatccttatga---gtagcaacaaattggagaagaatgatttagattgtattgaatgtact |
43327206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 43326454 - 43326498
Alignment:
| Q |
208 |
tcaagtaaattggtccatgtggcgtacaatttttcttgtgctttaa |
253 |
Q |
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| T |
43326454 |
tcaagcaaattggtccatgtggcgaacaa-ttttcttgtgctttaa |
43326498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 236 - 361
Target Start/End: Original strand, 33882849 - 33882971
Alignment:
| Q |
236 |
atttttcttgtgctttaaaggatttggtgtaaggatttaatccttatgatgagtagcagtaaattggagaagaatgatatagactgtatcgaatgtactt |
335 |
Q |
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| T |
33882849 |
atttttcttgtggtttaatggatttggtgtaagggtttgatcttt---atgagtagcaataaattggaaaagaatgatatggatcatattaaatgtactt |
33882945 |
T |
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| Q |
336 |
aaatgaattacaatgaaaaggaaaat |
361 |
Q |
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| T |
33882946 |
agaagaattacaattgaaaggaaaat |
33882971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 379
Target Start/End: Complemental strand, 35995757 - 35995614
Alignment:
| Q |
235 |
aatttttcttgtgctttaaaggatttggtgtaaggatttaatccttatgatgagtagcagtaaattggagaagaatgatatagactgtatcgaatgtact |
334 |
Q |
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| T |
35995757 |
aatttttcttgtgctttaatggatttgctgtaagagtttgatcctt---atgagtagcaacaaattggagaagaaagatatgtattgtattgaatgtatt |
35995661 |
T |
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| Q |
335 |
t--aaatgaattacaatgaaaaggaaaattgtgtgtgtcagatgtta |
379 |
Q |
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| T |
35995660 |
taaaaaaaaattacaattgaaaggaaaatgttgtgtgtcacatgtta |
35995614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 349
Target Start/End: Complemental strand, 49138368 - 49138319
Alignment:
| Q |
300 |
tggagaagaatgatatagactgtatcgaatgtacttaaatgaattacaat |
349 |
Q |
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| T |
49138368 |
tggagaagaatgatatggattgtattgaatgtacttagaggaattacaat |
49138319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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