View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17062_low_2 (Length: 414)
Name: NF17062_low_2
Description: NF17062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17062_low_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 9 - 414
Target Start/End: Original strand, 35189165 - 35189565
Alignment:
| Q |
9 |
acatcatcaaacgacaactcaaacactctctctatccaccataatactacgttttaccacaatcaatgtcccctctattctattctattctatttatgct |
108 |
Q |
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| T |
35189165 |
acatcatcaaacgacaactcaaacactctctctatccaccataatactacattttaccacaatcaatgtcccctcta-----ttctattctatttatgct |
35189259 |
T |
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| Q |
109 |
gcaccaataatcaatcacatcctcagaagatagggtgtggaaaaatgaatgatgggtttgtgagagctgatcaaattgatctaaaaaccattgatgaaca |
208 |
Q |
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| T |
35189260 |
gcaccaataatcaatcacattctcagaagatagggtgtggaaaaatgaatgatgggtttgtgagagctgatcaaattgatctaaaaaccattgatgaaca |
35189359 |
T |
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| Q |
209 |
acttgagaaacacttcaacaaggtaaatgatgattcttctcatgatcactcaaactctattgctactactggtggtaataacatggagcaaagagaagag |
308 |
Q |
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| T |
35189360 |
acttgagaaacacttcaacaaggtaaatgatgattcttctcatgatcactcaaactctattgctactactggtggtaataacatggagcaaagagaagag |
35189459 |
T |
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| Q |
309 |
tgggaaattgatccttctaacctcatcatcaagagtgtcttagctcgtggcacttgcggtactgttcaccgtggtttctatgatggccaagatgttgctg |
408 |
Q |
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| T |
35189460 |
tgggaaattgatccttctaacctcatcatcaagagtgtcttagctcgtggcactttcggtactgttcaccgtggtttctatgatggccaagatgttgctg |
35189559 |
T |
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| Q |
409 |
gtaact |
414 |
Q |
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| T |
35189560 |
gtaact |
35189565 |
T |
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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 309 - 410
Target Start/End: Original strand, 43970824 - 43970925
Alignment:
| Q |
309 |
tgggaaattgatccttctaacctcatcatcaagagtgtcttagctcgtggcacttgcggtactgttcaccgtggtttctatgatggccaagatgttgctg |
408 |
Q |
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| T |
43970824 |
tgggaaattgatccttctaaactcatcatcaaaagtgttattgctcgtggcacttttggcactgttcatcgtggtgtttatgatactcaagatgttgctg |
43970923 |
T |
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| Q |
409 |
gt |
410 |
Q |
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| T |
43970924 |
gt |
43970925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 232
Target Start/End: Original strand, 43970595 - 43970669
Alignment:
| Q |
158 |
tgatgggtttgtgagagctgatcaaattgatctaaaaaccattgatgaacaacttgagaaacacttcaacaaggt |
232 |
Q |
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| T |
43970595 |
tgatgggtttgtaagagcagatcagattgatctgaaaagcatcgatgaacagcttgaaagacatctcaacaaggt |
43970669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 411
Target Start/End: Original strand, 1663755 - 1663862
Alignment:
| Q |
304 |
aagagtgggaaattgatccttctaacctcatcatcaagagtgtcttagctcgtggcacttgcggtactgttcaccgtggtttctatgatggccaagatgt |
403 |
Q |
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| T |
1663755 |
aagaatgggagattgatccttctaaacttattatcaaaactgtcattgctcgtggtacttttggtactgttcatcgtggtgtttatgatggcatagatgt |
1663854 |
T |
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| Q |
404 |
tgctggta |
411 |
Q |
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| T |
1663855 |
tgctggta |
1663862 |
T |
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