View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17062_low_3 (Length: 407)
Name: NF17062_low_3
Description: NF17062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17062_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 13 - 396
Target Start/End: Complemental strand, 10037959 - 10037576
Alignment:
| Q |
13 |
aacctgtgaactgcgcagtatattatcttctttgttattgtagtcccattcttcaccatggaatgcaactgtaagttggaaggttaaacaatattaacat |
112 |
Q |
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| T |
10037959 |
aacctatgaactgcgcagtatattatcttctttgttattgtagtcccattcttcaccatggaatgcaactgtaagtttgaaggttaaacaatattaacat |
10037860 |
T |
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| Q |
113 |
atttcccaagctcttgtaatcctcacatgaataaattcaaatacataaaaattatttattctggatgaaccgcaaaggatgcaccagtcctccgaaagaa |
212 |
Q |
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| T |
10037859 |
atttcccaagctcttgtaatcctcacatgaataaattcaaatacataaaaattatttattctggatgaaccgcaaaggatgcaccagtcctctgaaagaa |
10037760 |
T |
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| Q |
213 |
agagaggagactaggaaggnnnnnnnnnnnnnnnnngcaaatgtttcttatcaacctaatcaacttaaaagaaacttacttccatggtatacccagctct |
312 |
Q |
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| T |
10037759 |
agagaggagactaggaaggaaaaaatcaataaaaaagcaaatgtttcttatcaacctaatcaacttaaaagaaacttacttccatggtatacccagctct |
10037660 |
T |
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| Q |
313 |
tgatgcgcacattacatgaaaatgagtagaacacttgcaacaacttgtacaagaaccatggctttgtttacaaattacacaggt |
396 |
Q |
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| T |
10037659 |
tgatgcgcacattacatgaaaatgagtagaacacttgcaacaacttgtacaagaaccatggctttgtttacaaattacacaggt |
10037576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 311 - 393
Target Start/End: Original strand, 48482863 - 48482945
Alignment:
| Q |
311 |
cttgatgcgcacattacatgaaaatgagtagaacacttgcaacaacttgtacaagaaccatggctttgtttacaaattacaca |
393 |
Q |
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| T |
48482863 |
cttgatgcacacatcacgtgaaaatatgtagcacacttgcaacaacttgtacaggaaccatgactttgtttacagatcacaca |
48482945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 48482568 - 48482640
Alignment:
| Q |
13 |
aacctgtgaactgcgcagtatattatcttctttgttattgtagtcccattcttcaccatggaatgcaactgta |
85 |
Q |
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| T |
48482568 |
aacctgtgaactgcgcaatatattagcgtctgtgttatttgagtccccttcttcactgtagaacgcaactgta |
48482640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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