View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17062_low_5 (Length: 335)
Name: NF17062_low_5
Description: NF17062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17062_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 48409022 - 48409231
Alignment:
| Q |
11 |
cacagagtttgtaaaacacatgttatatcttataatggtgttattatcaaacattgttgcatgcactttgcattttatcatacccgttgacggtttcacc |
110 |
Q |
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| T |
48409022 |
cacagagtttgtaaaacacatgtcatatcttataatggtgttattatcaaacattgttgcatgcactttgcattttatcatactcgttggcggtttcacc |
48409121 |
T |
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| Q |
111 |
caagagaaagtatgtgccggattttgcacttgatgttttgctttttgcatacaactccatttttggagggac-----aaaaacacatgtatatttattaa |
205 |
Q |
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| T |
48409122 |
caagaggaagtatgtgccggattttacacttgatgttttgctttttgcatacaactccatttttggagggacaaattaaaaacacatgtatatttattaa |
48409221 |
T |
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| Q |
206 |
aaatagtgac |
215 |
Q |
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| T |
48409222 |
aaatagtgac |
48409231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 48408977 - 48409014
Alignment:
| Q |
14 |
agagtttgtaaaacacatgttatatcttataatggtgt |
51 |
Q |
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| T |
48408977 |
agagtttgtaaaacacatgtcatatcttataatggtgt |
48409014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 317
Target Start/End: Original strand, 48409281 - 48409336
Alignment:
| Q |
265 |
aaactaaaatccagcattactc---taactatacctaaaattacttcccaaatatc |
317 |
Q |
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| T |
48409281 |
aaactaaaatccagcattactcctctaactatatctacaattacttcccaaatatc |
48409336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 18221813 - 18221978
Alignment:
| Q |
15 |
gagtttgtaaaacacatgttatatcttataatggtgttattatcaaacattgttgcatgcactttgcattttatcatacccgttgacggtttcacccaag |
114 |
Q |
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| T |
18221813 |
gagtttctaaaacacatgtcatatcccataatggtgttattatcaaacattgttgcatctacgttgcattttgttgtaccagttggcggtttcacccaag |
18221912 |
T |
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| Q |
115 |
agaaagtatgtgccggattttgcacttgatgttttgctttttgcatacaactccatttttggaggg |
180 |
Q |
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| T |
18221913 |
aggaagtacgcgtcagattttgctctcgatgttttgttctctgcatacaactccattcttgaaggg |
18221978 |
T |
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