View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_high_11 (Length: 612)
Name: NF17063_high_11
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 9 - 594
Target Start/End: Complemental strand, 46633487 - 46632907
Alignment:
| Q |
9 |
gaagaatatttgtcaactagtgatggactaagtaaatcatcaaagaaaataataaacaactctttagtaaaacagtgctgttctgaaatatatctaactt |
108 |
Q |
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| T |
46633487 |
gaagaatatttgtcaactagtgatggactaagtaaatcatcaaagaaaataa---acaactctttagtaaaacagtgctgttctgaaatatatctaactt |
46633391 |
T |
|
| Q |
109 |
ggtaacatttatacatgacaaaaaaccattacaaatccttcacacaaatgtaattcacagacagtacaaacaatgaatataagaagnnnnnnnnnnctct |
208 |
Q |
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| T |
46633390 |
ggtaacatttatacatgacaaaaaaccattacaaatccttcacacaaatgtaattcacagacagtacaaacaatgaatataagaagaaaaaaaaa-ctct |
46633292 |
T |
|
| Q |
209 |
acagaagttgtactttcaataaatcccagcactctatatcataaaaaacagaacttatattttctttagaactctaaaaggaaaagaacaactcagaaac |
308 |
Q |
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| T |
46633291 |
acagaagttgtactttcaataaatcccagcactctatatcataaaaaacagaacttatattttctttggaactctaaaaggaaaagaagaactcagaaac |
46633192 |
T |
|
| Q |
309 |
cttaacacctcaatgcttacgtttttgttggtcttgcaatgtcacttctattttagtgttgcacaaggtacacactcagtacctatctccctctggctgc |
408 |
Q |
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| T |
46633191 |
cttaacacctcaatgcttacgtttttgttggtcttgcaatgtgacttctattttagtgttgcacaaggtacacactcagtacctatctccctctggctgc |
46633092 |
T |
|
| Q |
409 |
aatcaaaacaatgtaacaaagcaattaatgacttatccgatatannnnnnnncttcttcaaacgattgtatgataaaaactagtactactcacatcatat |
508 |
Q |
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| T |
46633091 |
aatcaaaacaatgtaacaaagcaattaatgacttatccgatatatttttttt-ttcttcaaacgattgtatgataaaaactagtactactcacatcatat |
46632993 |
T |
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| Q |
509 |
gcaacaagggatctgcagtaattagtgtttgtgagcattgtacttgtcgaaccacactcgctgtctttgagtgaaactgccgatct |
594 |
Q |
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| T |
46632992 |
gcaacaagggatctgcagtaattagtgtttgtgagcattgtacttgtcgaaccacactcgctgtctttgagtgaaaccgccgatct |
46632907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 205 - 282
Target Start/End: Complemental strand, 7718136 - 7718059
Alignment:
| Q |
205 |
ctctacagaagttgtactttcaataaatcccagcactctatatcataaaaaacagaacttatattttctttagaactc |
282 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||| |||||||||| |||||| |
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| T |
7718136 |
ctctacagaagttgtactttcaatatatccgagcactctatattataaaaaacagaacttgtattttcttttgaactc |
7718059 |
T |
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