View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_high_110 (Length: 233)
Name: NF17063_high_110
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_high_110 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 3663615 - 3663816
Alignment:
| Q |
19 |
agtggggtaggctatggaggcaacctaatagccttctgtaagtcggacatcgaccaagaacttgtgtttcggattctcgcattaaaactcacaagtattt |
118 |
Q |
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| T |
3663615 |
agtggggtaggctatggaggcaacctaatagccttctgtaagtcggacatcgaccaagaacttgtgtttcggattctcgcattaaaactcacaagtattt |
3663714 |
T |
|
| Q |
119 |
gttatccttggtagaatgttgaatccctctttttgtgtgagaagctaggtcaatcaagtgtatnnnnnnnctttgtaatcccttttggttattcttcatt |
218 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3663715 |
gttatccttggtagaatgttgaatccctttttttgtgtgagaagctaggtcaatcaagtgtataaaaaaactttgtaatcccttttggttattcttcatt |
3663814 |
T |
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| Q |
219 |
tt |
220 |
Q |
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|| |
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| T |
3663815 |
tt |
3663816 |
T |
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