View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17063_high_117 (Length: 217)
Name: NF17063_high_117
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_high_117 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 67 - 195
Target Start/End: Complemental strand, 6348129 - 6348001
Alignment:
| Q |
67 |
tgataatattttaagaaaatataatcatatgtgttggtgtcgtcgtatatcaaacatcagacccattgatatgaagtgtctatctttagattgaatagta |
166 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||| |||| || ||| |||||||||||||| |||||||||||| ||||||| ||||||| ||| |
|
|
| T |
6348129 |
tgataatattttaagaaaatgtaatcatatgtgtcggtgttgtcgcatgtcagacatcagacccattaatatgaagtgtcaatctttaaattgaatggta |
6348030 |
T |
|
| Q |
167 |
tgtagcattgacgcatacatagacaacat |
195 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6348029 |
tgtagcattgacgcatacatagacaacat |
6348001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 63 - 195
Target Start/End: Complemental strand, 6325910 - 6325783
Alignment:
| Q |
63 |
acactgataatattttaagaaaatataatcatatgtgttggtgtcgtcgtatatcaaacatcagacccattgatatgaagtgtctatctttagattgaat |
162 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| || | ||||| |||| |||||||||||| ||||||||||||||| |
|
|
| T |
6325910 |
acactgataatattttaagaaaatgtaatcatatgtgttggtgtcgtcgcatgccggacatc-----cattaatatgaagtgtcaatctttagattgaat |
6325816 |
T |
|
| Q |
163 |
agtatgtagcattgacgcatacatagacaacat |
195 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |
|
|
| T |
6325815 |
ggtatgtagcattgatacatacatagacaacat |
6325783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 63 - 195
Target Start/End: Complemental strand, 6332866 - 6332739
Alignment:
| Q |
63 |
acactgataatattttaagaaaatataatcatatgtgttggtgtcgtcgtatatcaaacatcagacccattgatatgaagtgtctatctttagattgaat |
162 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| || | ||||| |||| |||||||||||| ||||||||||||||| |
|
|
| T |
6332866 |
acactgataatattttaagaaaatgtaatcatatgtgttggtgtcgtcgcatgccggacatc-----cattaatatgaagtgtcaatctttagattgaat |
6332772 |
T |
|
| Q |
163 |
agtatgtagcattgacgcatacatagacaacat |
195 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |
|
|
| T |
6332771 |
ggtatgtagcattgatacatacatagacaacat |
6332739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 6348201 - 6348153
Alignment:
| Q |
52 |
aaataacatttacactgataatattttaagaaaatataatcatatgtgt |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6348201 |
aaataatatttacactgataatattttaagaaaatgtaatcatatgtgt |
6348153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University