View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17063_high_12 (Length: 607)
Name: NF17063_high_12
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_high_12 |
 | |
|
| [»] scaffold0691 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 23)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 595
Target Start/End: Complemental strand, 2759854 - 2759250
Alignment:
| Q |
1 |
acaattgctagaggcaattgcttgaatttttgaacaatttcttttgccacaacctcaaggtcctgtggacaacgattgccaaggtcagatctgaatactt |
100 |
Q |
| |
|
|||||||| ||||| | ||||||||| ||||| |||||||||||||||||| ||||||| ||| |||||||||| ||||| ||| |||| ||||||| |
|
|
| T |
2759854 |
acaattgcaagaggtagttgcttgaacttttgcacaatttcttttgccacagcctcaagctccggtggacaacgccctccaagatcatatctaaatactt |
2759755 |
T |
|
| Q |
101 |
tattgcagaagagttcccatgctttgtttggagtcaaaagttgcaagttgtgaacacgaactttaaaggatttcttgaaaaaatcagcaactttcatcat |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| ||||||| ||| || |
|
|
| T |
2759754 |
tcttgcagaagagttcccatgctttgtttggagtcaaaagttgcaagttgtgaacatgaactagaaatgatttcttgaaaaaatctgcaacttgcataat |
2759655 |
T |
|
| Q |
201 |
tctagtggtgattatgatcctactacctttaatgttgtttggcatagcaaattgaacctggtccgcaaaatcttcttgccatacatcatcgaagaatatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| || ||||| ||||||| ||||||||| | |||||||||||||||||||||||| ||||||||| |
|
|
| T |
2759654 |
tctagtggtgattatgatcctactacctttgttgttattaggcatggcaaattcaacctggtcggaaaaatcttcttgccatacatcatcaaagaatatc |
2759555 |
T |
|
| Q |
301 |
aaatacctcttatcttctaggtatttccttacctctataatcagtgacctgtcatctaacttgcgtaacttctttggaagagggtcttcagtttcgtgac |
400 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2759554 |
aaatacctcttatgttctaggtatttccttacctctgtaatcagtgacctgtcatccattttgtgtaacttctttggaagagggtcttcagtttcctgac |
2759455 |
T |
|
| Q |
401 |
a----------atcatttttatcagtagttctctcacagtgtatgattgagaaactatgatgcaagctcgacaatcaaactgtgttgtcaccttttggct |
490 |
Q |
| |
|
| |||||||||||||||| | ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
2759454 |
aaaattgcgccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacgatgcaagcttgacaatcaaactgtgttgttaccttttggct |
2759355 |
T |
|
| Q |
491 |
gtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctcagctgcaccctccaataaccaaccatat |
590 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
2759354 |
gtcaaaaactagcttggcaagagtggttttgccgagaccccccattcctaccactgaaatcactgtgcgttcagctgaaccctccaataaccaaccatat |
2759255 |
T |
|
| Q |
591 |
agttc |
595 |
Q |
| |
|
||||| |
|
|
| T |
2759254 |
agttc |
2759250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 16 - 602
Target Start/End: Complemental strand, 2819182 - 2818586
Alignment:
| Q |
16 |
aattgcttgaatttttgaacaatttcttttgccacaacctcaaggtcctgtggacaacgattgccaaggtcagatctgaatactttattgcagaagagtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| ||||| || |||||||| ||||||||||||| |
|
|
| T |
2819182 |
aattgcttgaatttttgaacaatttcttttgccacaacctcaagttccggtggacaacgaccaccaagctcagacctaaatactttcttgcagaagagtt |
2819083 |
T |
|
| Q |
116 |
cccatgctttgtttggagtcaaaagttgcaagttgtgaacacgaactttaaaggatttcttgaaaaaatcagcaactttcatcattctagtggtgattat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
2819082 |
cccatgctttgtttggagtcaaaagttgcaagttgtgaacatgaactagaaatgatttcttgaaaaaatctgcaacttgcatcattcttgtggtgattat |
2818983 |
T |
|
| Q |
216 |
gatcctactacctttaatgttgtttggcatagcaaattgaacctggtccgcaaaatcttcttgccatacatcatcgaagaatatcaaatacctcttatct |
315 |
Q |
| |
|
||||||||||||||| |||| || ||||| ||||||| ||||||||| | |||||||||||||||||||||||| |||||||| ||||||||||||| | |
|
|
| T |
2818982 |
gatcctactacctttgttgttattgggcatggcaaattcaacctggtcggaaaaatcttcttgccatacatcatcaaagaatattaaatacctcttatgt |
2818883 |
T |
|
| Q |
316 |
tctaggtatttccttacctctataatcagtgacctgtcatctaacttgcgtaacttctttggaagagggtcttcagtttcgtga----------caatca |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| | |||||||| ||| | || ||||||||||| ||| ||| | |||| |
|
|
| T |
2818882 |
tctaggtatttccttacctctataatcagtaacctgtcatccattttgcgtaaaatctctagatcagggtcttcagcttcctgataaaattgctccatca |
2818783 |
T |
|
| Q |
406 |
tttttatcagtagttctctcacagtgtatgattgagaaactatgatgcaagctcgacaatcaaactgtgttgtcaccttttggctgtcaaaaacttgctt |
505 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
2818782 |
tttttatcagtaatcctctcacagtgtatgattgagaaactacgatgcaagctcgacaatcaaactgtgttgttaccttttggctgtcaaaaactagctt |
2818683 |
T |
|
| Q |
506 |
ggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctcagctgcaccctccaataaccaaccatatagttcatctctc |
602 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2818682 |
ggcaagagtggtttttcctagaccccccattcctaccactgatatcactgtgcgctcggctgcaccctccaataaccaaccatatagttcttctctc |
2818586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 89 - 584
Target Start/End: Complemental strand, 2807819 - 2807314
Alignment:
| Q |
89 |
atctgaatactttattgcagaagagttcccatgctttgtttggagtcaaaagttgcaagttgtgaacacgaactttaaaggatttcttgaaaaaatcagc |
188 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| || |
|
|
| T |
2807819 |
atctaaatactttcttgcagaagagttcccatgctttgtttggagtcaaaagttgcaagttgtgaacatgaactagaaaggatttcttgaaaaaatctgc |
2807720 |
T |
|
| Q |
189 |
aactttcatcattctagtggtgattatgatcctactacctttaatgttgtttggcatagcaaattgaacctggtccgcaaaatcttcttgccatacatca |
288 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| | |||||||||||||||||||||| |
|
|
| T |
2807719 |
aacttgcatcattctagttgtgattatgatcctactacctttattgttgttaggcatagcaaattcaacctggtcagaaaaatcttcttgccatacatca |
2807620 |
T |
|
| Q |
289 |
tcgaagaatatcaaatacctcttatcttctaggtatttccttacctctataatcagtgacctgtcatctaacttgcgtaacttctttggaagagggtctt |
388 |
Q |
| |
|
|| |||||||||||||||||||||| || ||||||| ||| || |||| ||||||||| ||||||| || ||||||||||| |||||||||||||||| |
|
|
| T |
2807619 |
tcaaagaatatcaaatacctcttatgttgcaggtattgcctcacttctacaatcagtgatttgtcatccaatttgcgtaacttatttggaagagggtctt |
2807520 |
T |
|
| Q |
389 |
cagtttcgtgaca----------atcatttttatcagtagttctctcacagtgtatgattgagaaactatgatgcaagctcgacaatcaaactgtgttgt |
478 |
Q |
| |
|
||||||| ||||| ||||| ||||||| | |||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||| |
|
|
| T |
2807519 |
cagtttcctgacaaaattgctccatcatgtttatcatcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacgacaatcaaagtgtgttgt |
2807420 |
T |
|
| Q |
479 |
caccttttggctgtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctcagctgcaccctccaat |
578 |
Q |
| |
|
||| ||||||| ||||||||| ||||||||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||||| ||||||||||| |
|
|
| T |
2807419 |
taccgtttggctatcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaat |
2807320 |
T |
|
| Q |
579 |
aaccaa |
584 |
Q |
| |
|
|||||| |
|
|
| T |
2807319 |
aaccaa |
2807314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 80 - 601
Target Start/End: Complemental strand, 2769630 - 2769099
Alignment:
| Q |
80 |
caaggtcagatctgaatactttattgcagaagagttcccatgctttgtttggagtcaaaagttgcaagttgtgaacacgaactttaaaggatttcttgaa |
179 |
Q |
| |
|
|||| ||| |||||||| |||| |||||||||||||||||||||||||| |||| ||||||||||| ||| ||||| ||||| ||||||||||||||| |
|
|
| T |
2769630 |
caagttcaaatctgaatgctttcttgcagaagagttcccatgctttgttaggaggcaaaagttgcatgttaagaacatgaactagaaaggatttcttgaa |
2769531 |
T |
|
| Q |
180 |
aaaatcagcaactttcatcattctagtggtgattatgatcctactacctttaatgttgtttggcatagcaaattgaacctggtccgcaaaatcttcttgc |
279 |
Q |
| |
|
|||||| ||||| | ||||||||| ||||| |||||||||||||||| |||| |||| |||||||| | ||||| ||||||||| | ||||||||||||| |
|
|
| T |
2769530 |
aaaatctgcaacatgcatcattcttgtggttattatgatcctactacgtttattgttatttggcatggaaaattcaacctggtcggaaaaatcttcttgc |
2769431 |
T |
|
| Q |
280 |
catacatcatcgaagaatatcaaatacctcttatcttctaggtatttccttacctctataatcagtgacctgtcatctaacttgcgtaacttctttggaa |
379 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||| | ||||||| ||||||| | ||| ||||| ||||| | | |
|
|
| T |
2769430 |
catacatcatcaaagaatatcaaatacctcttatgttgtaggtatttccttacctctattaccagtgacatgtcatccattttgtgtaacatctttagca |
2769331 |
T |
|
| Q |
380 |
gagggtcttcagtttcgtgaca----------atcatttttatcagtagttctctcacagtgtatgattgagaaactatgatgcaagctcgacaatcaaa |
469 |
Q |
| |
|
|||| ||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
2769330 |
gaggttcttcagtttcctgacaaaattgctccatcatttttatcagtaaccctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaa |
2769231 |
T |
|
| Q |
470 |
ctgtgttgtcaccttttggctgtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctcagctgca |
569 |
Q |
| |
|
| || || ||||||||||||||| ||||| | ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| ||||||| |
|
|
| T |
2769230 |
gtttgcagttaccttttggctgtcataaactagtttggcaagagtggtttttcctagaccccccattcctaccactgatatcactgtgcgcttagctgca |
2769131 |
T |
|
| Q |
570 |
ccctccaataaccaaccatatagttcatctct |
601 |
Q |
| |
|
|||||||||||||||||| ||| ||| ||||| |
|
|
| T |
2769130 |
ccctccaataaccaaccaaataattcttctct |
2769099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 601
Target Start/End: Original strand, 2838098 - 2838708
Alignment:
| Q |
1 |
acaattgctagaggcaattgcttgaatttttgaacaatttcttttgccacaacctcaaggtcctgtggacaacgattgccaaggtcagatctgaatactt |
100 |
Q |
| |
|
|||||||| ||||| | |||||| ||||||||||||||||||||| |||| ||| ||| || |||||||| | ||| | ||| |||| ||||||| |
|
|
| T |
2838098 |
acaattgccagaggtagctgcttgcatttttgaacaatttcttttgacacagccttaagctctggtggacaatgcccaccaggttcaaatctaaatactt |
2838197 |
T |
|
| Q |
101 |
tattgcagaagagttcccatgctttgtttggagtcaaaagttgcaagttgtgaacacgaactttaaaggatttcttgaaaaaatcagcaactttcatcat |
200 |
Q |
| |
|
| || |||||||||||||||||||||||||||| ||||||||||| ||| |||| | || | |||||||||||||||||| || ||||| | |||||| |
|
|
| T |
2838198 |
tcttacagaagagttcccatgctttgtttggaggcaaaagttgcaggttatgaatatgagttagaaaggatttcttgaaaaattctgcaacatgcatcat |
2838297 |
T |
|
| Q |
201 |
tctagtggtgattatgatcctactacctttaatgttgtttggcatagcaaattgaacctggtccgcaaaatcttcttgccatacatcatcgaagaatatc |
300 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||| || ||||| ||||||| || |||||| | ||||||||||||||| |||||||| ||||||||| |
|
|
| T |
2838298 |
tctagtagtgattatgatcctactacctttattgttattaggcatggcaaattcaatctggtcggaaaaatcttcttgccaaacatcatcaaagaatatc |
2838397 |
T |
|
| Q |
301 |
aaatacctcttatcttctaggtatttccttacctctataatcagtgacctgtcatctaacttgcgtaacttctttggaagagggtcttcagtttcgtgac |
400 |
Q |
| |
|
|| |||||||||| || ||||||| ||| || ||| |||||||||| |||||| ||| | ||| ||| ||||||||||||||||||| | ||| |
|
|
| T |
2838398 |
aagtacctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgac |
2838497 |
T |
|
| Q |
401 |
a----------atcatttttatcagtagttctctcacagtgtatgattgagaaactatgatgcaagctcgacaatcaaactgtgttgtcaccttttggct |
490 |
Q |
| |
|
| ||||| ||||||| | |||||||||||||||||||||||||| ||| |||||| ||||||||| | || ||| ||||||||||| |
|
|
| T |
2838498 |
aaaattgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggct |
2838597 |
T |
|
| Q |
491 |
gtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctcagctgcaccctccaataaccaaccatat |
590 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2838598 |
ttcaaaaactagcttggcaagagtggtttttcctagaccccccattcctaccactgatatgactgtgcgctcagctgcaccctccaataaccaaccatat |
2838697 |
T |
|
| Q |
591 |
agttcatctct |
601 |
Q |
| |
|
| ||| ||||| |
|
|
| T |
2838698 |
atttcttctct |
2838708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 587
Target Start/End: Original strand, 2855308 - 2855904
Alignment:
| Q |
1 |
acaattgctagaggcaattgcttgaatttttgaacaatttcttttgccacaacctcaaggtcctgtggacaacgattgccaaggtcagatctgaatactt |
100 |
Q |
| |
|
|||||||| ||||| | |||||| ||||| ||||||||||||||| |||| ||||||| || |||||||| | ||| | ||| |||| ||||||| |
|
|
| T |
2855308 |
acaattgccagaggtagctgcttgcattttagaacaatttcttttgacacagcctcaagctctggtggacaatgcccaccaggttcaaatctaaatactt |
2855407 |
T |
|
| Q |
101 |
tattgcagaagagttcccatgctttgtttggagtcaaaagttgcaagttgtgaacacgaactttaaaggatttcttgaaaaaatcagcaactttcatcat |
200 |
Q |
| |
|
| || |||||||||||||||||||||||||||| ||||||||||| ||| |||| | || | |||||||||||||||||| || ||||| | |||||| |
|
|
| T |
2855408 |
tcttacagaagagttcccatgctttgtttggaggcaaaagttgcaggttatgaatatgagttagaaaggatttcttgaaaaattctgcaacatgcatcat |
2855507 |
T |
|
| Q |
201 |
tctagtggtgattatgatcctactacctttaatgttgtttggcatagcaaattgaacctggtccgcaaaatcttcttgccatacatcatcgaagaatatc |
300 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||| || ||||| ||||||| ||||||||| | ||||||||||||||| |||||||| ||||||| | |
|
|
| T |
2855508 |
tctagtagtgattatgatcctactacctttattgttattaggcatggcaaattcaacctggtcggaaaaatcttcttgccaaacatcatcaaagaatacc |
2855607 |
T |
|
| Q |
301 |
aaatacctcttatcttctaggtatttccttacctctataatcagtgacctgtcatctaacttgcgtaacttctttggaagagggtcttcagtttcgtgac |
400 |
Q |
| |
|
||||||||||||| || ||||||| |||||| | ||||||||||||| |||||| | ||| | ||| || ||||||||||||||||||| | ||| |
|
|
| T |
2855608 |
aaatacctcttatgttgcaggtattgccttacttgtataatcagtgactggtcatccattttgtgcaacatcagtggaagagggtcttcagttccccgac |
2855707 |
T |
|
| Q |
401 |
a----------atcatttttatcagtagttctctcacagtgtatgattgagaaactatgatgcaagctcgacaatcaaactgtgttgtcaccttttggct |
490 |
Q |
| |
|
| ||||| ||||||| | |||||||||||||||||||||||||| |||||||||| ||||||||||| | |||||| ||||||||||| |
|
|
| T |
2855708 |
aaaattgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgttgttaccttttggct |
2855807 |
T |
|
| Q |
491 |
gtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctcagctgcaccctccaataaccaacca |
587 |
Q |
| |
|
|||||||| | ||||||||||||| ||||| |||| |||||||||||| |||||||||||||| ||||||||| | ||| ||||||||||||||| |
|
|
| T |
2855808 |
gtcaaaaattagcttggcaagagtagtttttcctataccccccattcccaccactgaaatcactttgcgctcagatataccttccaataaccaacca |
2855904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 1 - 587
Target Start/End: Complemental strand, 2749635 - 2749039
Alignment:
| Q |
1 |
acaattgctagaggcaattgcttgaatttttgaacaatttcttttgccacaacctcaaggtcctgtggacaacgattgccaaggtcagatctgaatactt |
100 |
Q |
| |
|
|||||||||||||| | ||| || | ||||||||||||||||||| |||| ||||||| || ||||||| | ||||| ||| |||| |||||| |
|
|
| T |
2749635 |
acaattgctagaggtagctgcctgcacttttgaacaatttcttttgacacagcctcaagttctgatggacaatgtccaccaagctcatatctaaatactc |
2749536 |
T |
|
| Q |
101 |
tattgcagaagagttcccatgctttgtttggagtcaaaagttgcaagttgtgaacacgaactttaaaggatttcttgaaaaaatcagcaactttcatcat |
200 |
Q |
| |
|
| |||||||| |||||||||||||||||||||| ||||||||||| |||||||| | || | ||||||||| ||||||||||| ||||| | |||||| |
|
|
| T |
2749535 |
tcttgcagaaaagttcccatgctttgtttggaggcaaaagttgcaggttgtgaatatgagttagaaaggattttttgaaaaaatctgcaacatacatcat |
2749436 |
T |
|
| Q |
201 |
tctagtggtgattatgatcctactacctttaatgttgtttggcatagcaaattgaacctggtccgcaaaatcttcttgccatacatcatcgaagaatatc |
300 |
Q |
| |
|
|||||||||||| || ||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
2749435 |
tctagtggtgatgataatcctactacctttattgttatttggcatggcaaattgaacctggtccgcaaaatcttcttgccatacgtcatcaaagaatatc |
2749336 |
T |
|
| Q |
301 |
aaatacctcttatcttctaggtatttccttacctctataatcagtgacctgtcatctaacttgcgtaacttctttggaagagggtcttcagtttcgtgac |
400 |
Q |
| |
|
||||||||||||| || ||||||| ||| || |||||||| |||||| |||||| | ||| ||||| ||| |||||| ||||| ||| ||| |
|
|
| T |
2749335 |
aaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttagtactccgac |
2749236 |
T |
|
| Q |
401 |
a----------atcatttttatcagtagttctctcacagtgtatgattgagaaactatgatgcaagctcgacaatcaaactgtgttgtcaccttttggct |
490 |
Q |
| |
|
| ||||| ||||||| | ||||||||||||| |||||||||||| ||| |||||| ||||||||||| |||| || ||||||| ||| |
|
|
| T |
2749235 |
agaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgct |
2749136 |
T |
|
| Q |
491 |
gtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctcagctgcaccctccaataaccaacca |
587 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||| || |||||||||||||| || ||||| |||||||||||| |||| ||||||||||||||| |
|
|
| T |
2749135 |
ttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaacca |
2749039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 103 - 587
Target Start/End: Complemental strand, 5413424 - 5412930
Alignment:
| Q |
103 |
ttgcagaagagttcccatgctttgtttggagtcaaaagttgcaagttgtgaacacgaactttaaaggatttcttgaaaaaatcagcaactttcatcattc |
202 |
Q |
| |
|
|||||| | |||||||||||||||||||||| ||||||||||| |||||||||| ||| ||||||||| ||||||||||| ||||||| |||||||| |
|
|
| T |
5413424 |
ttgcagtaaagttcccatgctttgtttggaggcaaaagttgcaggttgtgaacatatactagaaaggattttttgaaaaaatccgcaacttgcatcattc |
5413325 |
T |
|
| Q |
203 |
tagtggtgattatgatcctactacctttaatgttgtttggcatagcaaattgaacctggtccgcaaaatcttcttgccatacatcatcgaagaatatcaa |
302 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| || ||||| ||||||| ||||||||| | ||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
5413324 |
tagtggtgattatgatcctactacctttattgtttttaggcatcgcaaattcaacctggtcagagaaatcttgttgccatacatcatcaaagaatatcaa |
5413225 |
T |
|
| Q |
303 |
atacctcttatcttctaggtatttccttacctctataatcagtgacctgtcatctaacttgcgtaacttctttggaagagggtcttcagtttcgtgaca- |
401 |
Q |
| |
|
||||||||||| || ||||||| ||| || |||||||||||||||| |||||| | ||| ||||| ||| ||||||| |||||||||| | |||| |
|
|
| T |
5413224 |
atacctcttatgttgcaggtattgcctcacttctataatcagtgaccggtcatccattttgtgtaacatctgcggaagagagtcttcagttccccgacaa |
5413125 |
T |
|
| Q |
402 |
---------atcatttttatcagtagttctctcacagtgtatgattgagaaactatgatgcaagctcgacaatcaaactgtgttgtcaccttttggctgt |
492 |
Q |
| |
|
||||| ||||||| | |||||||||||||||||||||||||| | | |||||| | ||||||||| |||| || ||||||||||| | |
|
|
| T |
5413124 |
aattgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgttacgcaagcacaacaatcaaagtgtgctgataccttttggcttt |
5413025 |
T |
|
| Q |
493 |
caaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctcagctgcaccctccaataaccaacca |
587 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| || || || || || |||||||| ||||||||||||||| |
|
|
| T |
5413024 |
caaaaactagcttggcaagagtggtttttcctaggccccccattcctaccactgatatgactgtacgttccgctgcaccatccaataaccaacca |
5412930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 89 - 587
Target Start/End: Complemental strand, 2797913 - 2797405
Alignment:
| Q |
89 |
atctgaatactttattgcagaagagttcccatgctttgtttggagtcaaaagttgcaagttgtgaacacgaactttaaaggatttcttgaaaaaatcagc |
188 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||| || |
|
|
| T |
2797913 |
atctgaatgctttcttgcagaagagttcccatgatttgtttggtgtcaaaagttgcaagttgtgaacatgaacttgaaaggatttcttgaaaaaatctgc |
2797814 |
T |
|
| Q |
189 |
aactttcatcattctagtggtgattatgatcctactacctttaatgttgtttggcatagcaaattgaacctggtccgcaaaatcttcttgccatacatca |
288 |
Q |
| |
|
||||| ||||||||| |||||||| ||||||||| | |||| |||| || ||||| ||||||| ||||||||| | ||| |||||||||||||||||| |
|
|
| T |
2797813 |
aacttgcatcattctcgtggtgatgatgatcctatttgctttgttgttattaggcatggcaaattcaacctggtcagaaaagtcttcttgccatacatca |
2797714 |
T |
|
| Q |
289 |
tcgaagaatatcaaatacctcttatcttctaggtatttccttacctctataatcagtgacctgtcatctaacttgcgtaacttctttggaagagggtctt |
388 |
Q |
| |
|
|| ||||||||||||||| | |||| || ||||||| ||| || | |||||||| |||| ||||||| | ||| ||||| ||| ||||||| || |
|
|
| T |
2797713 |
tcaaagaatatcaaatactttttatgttgcaggtattgcctcacttgtataatcaatgacttgtcatccattttgtgtaacatctgcaaaagagggcttt |
2797614 |
T |
|
| Q |
389 |
cagtttcgtgaca----------atcatttttatcagtagttctctcacagtgtatgattgagaaactatgatgcaagctcgacaatcaaactgtgttgt |
478 |
Q |
| |
|
|||||||| ||| ||||| || |||| || | ||||| |||||||||||||||||| |||||||||| ||||||||||| | |||||| |
|
|
| T |
2797613 |
cagtttcgctacaaaattcctccatcatgttgatcaatatccccctcacggtgtatgattgagaaactgtgatgcaagcacgacaatcaaattttgttgt |
2797514 |
T |
|
| Q |
479 |
caccttttggctgtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctcagctgcaccctccaat |
578 |
Q |
| |
|
|||||||| ||||| |||||| ||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||| ||||| | | |
|
|
| T |
2797513 |
taccttttgactgtcgaaaactagcttggcaagagtggtttttcctagacctcccattccaaccactgaaatcactgtgcgctcagctgtgccctctagt |
2797414 |
T |
|
| Q |
579 |
aaccaacca |
587 |
Q |
| |
|
||||||||| |
|
|
| T |
2797413 |
aaccaacca |
2797405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 79 - 356
Target Start/End: Complemental strand, 2790882 - 2790605
Alignment:
| Q |
79 |
ccaaggtcagatctgaatactttattgcagaagagttcccatgctttgtttggagtcaaaagttgcaagttgtgaacacgaactttaaaggatttcttga |
178 |
Q |
| |
|
||||| ||| |||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||| |||||||||| |
|
|
| T |
2790882 |
ccaagctcaaatctgaatgctttcttgcagaagagttcccatgctttgtttggtgtcaaaagttgcaagttgtgaacatgaactagaaaagatttcttga |
2790783 |
T |
|
| Q |
179 |
aaaaatcagcaactttcatcattctagtggtgattatgatcctactacctttaatgttgtttggcatagcaaattgaacctggtccgcaaaatcttcttg |
278 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||| ||||||| |||| ||||| || ||||||| || |||||| | |||||||||||| |
|
|
| T |
2790782 |
aaaaatctgcaacttgcatcattctagtggtgattatgatcctacaacctttattgttatttggaatggcaaattcaatctggtcggaaaaatcttcttg |
2790683 |
T |
|
| Q |
279 |
ccatacatcatcgaagaatatcaaatacctcttatcttctaggtatttccttacctctataatcagtgacctgtcatc |
356 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||| || ||||||| ||| || | || ||| |||||| ||||||| |
|
|
| T |
2790682 |
ccatacatcatcgaagaatatcaaatactttttatgtttcaggtattgcctcacttgtagaatgagtgacttgtcatc |
2790605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 507 - 587
Target Start/End: Complemental strand, 2790491 - 2790411
Alignment:
| Q |
507 |
gcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctcagctgcaccctccaataaccaacca |
587 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
2790491 |
gcaagagtggtttttcctagacctcccattccaaccactgaaatcactgtgcgctcagctgtgccctccaataaccaacca |
2790411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 488 - 562
Target Start/End: Complemental strand, 21945732 - 21945658
Alignment:
| Q |
488 |
gctgtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctc |
562 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||| ||| | || |||||||||||||| |||| ||||||||||| |
|
|
| T |
21945732 |
gctgtcaaaaactttcttggctagagtggtttttccttgccctcccattcctaccacggaaactacagtgcgctc |
21945658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 488 - 562
Target Start/End: Complemental strand, 21930529 - 21930455
Alignment:
| Q |
488 |
gctgtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctc |
562 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||| ||| | || |||||||||||||| || | |||||||||||| |
|
|
| T |
21930529 |
gctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctc |
21930455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 488 - 562
Target Start/End: Complemental strand, 22028108 - 22028034
Alignment:
| Q |
488 |
gctgtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctc |
562 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||| ||| | || |||||||||||||| || | |||||||||||| |
|
|
| T |
22028108 |
gctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctc |
22028034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 488 - 562
Target Start/End: Complemental strand, 22034625 - 22034551
Alignment:
| Q |
488 |
gctgtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctc |
562 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||| ||| | || |||||||||||||| || | |||||||||||| |
|
|
| T |
22034625 |
gctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctc |
22034551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 488 - 562
Target Start/End: Complemental strand, 22052841 - 22052767
Alignment:
| Q |
488 |
gctgtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctc |
562 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||| ||| | || ||||||||||||| |||| |||||||||||| |
|
|
| T |
22052841 |
gctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccagagaaaccacagtgcgctc |
22052767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 488 - 562
Target Start/End: Complemental strand, 22187096 - 22187022
Alignment:
| Q |
488 |
gctgtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctc |
562 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||| ||| | || |||||||||||||| |||| ||||||||||| |
|
|
| T |
22187096 |
gctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagaaagaacagtgcgctc |
22187022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 562
Target Start/End: Complemental strand, 21937261 - 21937187
Alignment:
| Q |
488 |
gctgtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctc |
562 |
Q |
| |
|
|||||||||| ||| ||| || ||||||||||| ||| | || |||||||||||||| |||| ||||||||||| |
|
|
| T |
21937261 |
gctgtcaaaagctttcttagctagagtggtttttccttgccctcccattcctaccacagaaacaacagtgcgctc |
21937187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 562
Target Start/End: Complemental strand, 22104831 - 22104757
Alignment:
| Q |
488 |
gctgtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctc |
562 |
Q |
| |
|
||||||||||||| |||||| ||||| ||||| ||| | || |||||||||||||| |||| ||||||||||| |
|
|
| T |
22104831 |
gctgtcaaaaactctcttggctagagttgtttttccttgccctcccattcctaccaccgaaactacagtgcgctc |
22104757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 562
Target Start/End: Complemental strand, 22115193 - 22115119
Alignment:
| Q |
488 |
gctgtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctc |
562 |
Q |
| |
|
|||||||||||||| ||| | ||||||||||| ||| | || |||||||||||||| |||| ||||||||||| |
|
|
| T |
22115193 |
gctgtcaaaaactttctttgatagagtggtttttccttgccctcccattcctaccacagaaagaacagtgcgctc |
22115119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 480 - 538
Target Start/End: Original strand, 22368262 - 22368320
Alignment:
| Q |
480 |
accttttggctgtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcc |
538 |
Q |
| |
|
||||||||| |||||||||||| |||||| ||||||||||| || || || |||||||| |
|
|
| T |
22368262 |
accttttggttgtcaaaaactttcttggctagagtggtttttcccagtcctcccattcc |
22368320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 562
Target Start/End: Original strand, 22648516 - 22648590
Alignment:
| Q |
488 |
gctgtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctc |
562 |
Q |
| |
|
||||||||| |||| |||||||||||||||| ||||| || ||||| |||||||| || || ||||||||||| |
|
|
| T |
22648516 |
gctgtcaaacacttttctggcaagagtggtttttcctagccctcccatacctaccacagagatgacagtgcgctc |
22648590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 488 - 520
Target Start/End: Complemental strand, 22208128 - 22208096
Alignment:
| Q |
488 |
gctgtcaaaaacttgcttggcaagagtggtttt |
520 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
22208128 |
gctgtcaaaaacttgcttggcaagagttgtttt |
22208096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 601
Target Start/End: Original strand, 5650 - 6260
Alignment:
| Q |
1 |
acaattgctagaggcaattgcttgaatttttgaacaatttcttttgccacaacctcaaggtcctgtggacaacgattgccaaggtcagatctgaatactt |
100 |
Q |
| |
|
|||||||| ||||| | |||||| |||||| |||||||||||||| ||| ||||||| || |||||||| | ||| | ||| |||| ||||||| |
|
|
| T |
5650 |
acaattgcaagaggtagctgcttgcattttttaacaatttcttttgatacagcctcaagctcaagtggacaatgcccaccaggttcaaatctaaatactt |
5749 |
T |
|
| Q |
101 |
tattgcagaagagttcccatgctttgtttggagtcaaaagttgcaagttgtgaacacgaactttaaaggatttcttgaaaaaatcagcaactttcatcat |
200 |
Q |
| |
|
| |||||||||||||||||| |||||||||||| ||| ||||||| ||||||||| ||||| ||||||||||||||||||| || ||||| |||||| |
|
|
| T |
5750 |
ttttgcagaagagttcccatactttgtttggaggcaagagttgcagtttgtgaacatgaactataaaggatttcttgaaaaattcggcaacaagcatcat |
5849 |
T |
|
| Q |
201 |
tctagtggtgattatgatcctactacctttaatgttgtttggcatagcaaattgaacctggtccgcaaaatcttcttgccatacatcatcgaagaatatc |
300 |
Q |
| |
|
||| ||||||||||| ||||||||||||||| |||| || ||||| ||||||| ||||||||| | |||||||||||||||||||||||| ||||||||| |
|
|
| T |
5850 |
tcttgtggtgattataatcctactacctttattgttattaggcatggcaaattcaacctggtcagaaaaatcttcttgccatacatcatcaaagaatatc |
5949 |
T |
|
| Q |
301 |
aaatacctcttatcttctaggtatttccttacctctataatcagtgacctgtcatctaacttgcgtaacttctttggaagagggtcttcagtttcgtgac |
400 |
Q |
| |
|
||||||||||||| || ||||||| ||| || |||||||| | |||| ||||||| | ||| ||||| | | |||||||||||||||||||| ||| |
|
|
| T |
5950 |
aaatacctcttatgttgcaggtattgcctcacttctataattaatgacttgtcatccattttgtgtaacatttgcggaagagggtcttcagtttcccgac |
6049 |
T |
|
| Q |
401 |
a----------atcatttttatcagtagttctctcacagtgtatgattgagaaactatgatgcaagctcgacaatcaaactgtgttgtcaccttttggct |
490 |
Q |
| |
|
| ||||| ||||| |||| ||||||| ||||||| |||||||||| ||||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
6050 |
aaaattgctccatcatgtttatgagtaaccctctcacggtgtatgtttgagaaactgcgatgcaagcacgacaatcaaattgtgttgttaccttttggct |
6149 |
T |
|
| Q |
491 |
gtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctcagctgcaccctccaataaccaaccatat |
590 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||| ||| |||||||||||||||||||| || ||||||||||||| || ||||||||||||||||||| |
|
|
| T |
6150 |
gtcaaaaactagcttggcaagagtggttttccctatacctcccattcctaccactgaaattacggtgcgctcagctggactctccaataaccaaccatat |
6249 |
T |
|
| Q |
591 |
agttcatctct |
601 |
Q |
| |
|
| ||| ||||| |
|
|
| T |
6250 |
aattcctctct |
6260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 558
Target Start/End: Complemental strand, 27294656 - 27294586
Alignment:
| Q |
488 |
gctgtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgc |
558 |
Q |
| |
|
|||||||||||||| |||| | ||||||||||| ||| | || |||||||||||||| |||| ||||||| |
|
|
| T |
27294656 |
gctgtcaaaaactttcttgactagagtggtttttccttgtcctcccattcctaccacagaaactacagtgc |
27294586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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