View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_high_121 (Length: 212)
Name: NF17063_high_121
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_high_121 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 5 - 196
Target Start/End: Original strand, 38147732 - 38147932
Alignment:
| Q |
5 |
gaacgacgcccttatcacacacaggggctcggctcattcacacacatacattttttgggtatttctttttccattgtactctattctcacgcaccatatt |
104 |
Q |
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| T |
38147732 |
gaacgacgcccttatcacacacacaggctcggctcattcacacacatacatttt-tgggtatttctttttccattgtactctattctcacgcaccatatt |
38147830 |
T |
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| Q |
105 |
caaagtataacatttgaagnnnnnnngtaggattttttaga----------gtgtttggaagggtttaagatctaaaatttgtaagactagctagaaaag |
194 |
Q |
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| T |
38147831 |
caaagtataacattcgaagaaaaaaagtaggattttttagaatgttttaacgtgttttaaagggtttaagatctaaaatttgaaagactggctagaaaag |
38147930 |
T |
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| Q |
195 |
ag |
196 |
Q |
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|| |
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| T |
38147931 |
ag |
38147932 |
T |
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