View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_high_2 (Length: 1000)
Name: NF17063_high_2
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 800; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 800; E-Value: 0
Query Start/End: Original strand, 43 - 988
Target Start/End: Complemental strand, 51351123 - 51350157
Alignment:
| Q |
43 |
gagaaacttcagccacaactgtggaaaacagagttgtttgcatgtcacaaaagctttgttcttctacgcttcgatatatacttgcttgcacttggtgggt |
142 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
51351123 |
gagaaacttcagccacaactgtggaaaacaaagttgtttgcatgtcacaaaagctttgttcttctacgcttcgatata--cttgcttgcacttggtgg-t |
51351027 |
T |
|
| Q |
143 |
ggtgaaatcaaaggctgtgttcatgctctaggagctgatcaatttgatgacaagaatccaaaggatcgtctccaactagctagcttctttgatt----gg |
238 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
51351026 |
ggtgaaatcaaaggctgtgttcctgctctaggagctgatcaatttgatgacaagaatccaaaggaccgtctccaactagctagcttctttgattaattgg |
51350927 |
T |
|
| Q |
239 |
tttctgttagcttaggtgccacctttgtagttcatgttagatcacaattcaaatggtacaaaggttttcttatatctctcttatatgcttctgctgcact |
338 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51350926 |
tttttgttagcttaggtgccacctttgtagttcatgttagatcacaattcaaatggtacaaaggttttcttatatctctcttatatgcttctgctgcact |
51350827 |
T |
|
| Q |
339 |
aatttgcattgtttctggaaagagattctattgtaccccgaatccaggagggagtccattgttgggtattttacagggaccgtttcttcattcgcctcca |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51350826 |
aatttgcattgtttctggaaagagattctattgtaccccgaatccaggagggagtccattgttgggtattttacagggaccgtttcttcattcgcctcca |
51350727 |
T |
|
| Q |
439 |
tatgttttatatatagctattcaagttgaatgtgtgtcaggtgtgttgaacaccgacatgacacatacttacattcaattttctcaaataattatcgttt |
538 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51350726 |
tatgttttatatatagctattcaagttgaatgtgtgtcagatgtgttgaacaccgacatgacacatacttacattcaattttctcaaataattatcgttt |
51350627 |
T |
|
| Q |
539 |
tcgaacgtgtgagagttttagtattttgacaa----------------------tcatatacttattattttgtaattgttcttgaaggtgctggttgtc |
616 |
Q |
| |
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||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51350626 |
tcgaacgtgtgagagttttagtattgtgacaatgtccgtatctctgtcagtgcttcatatacttattattttgtaattgttcttgaaggtgctggttgtc |
51350527 |
T |
|
| Q |
617 |
acggtcaagaattggagggtgaaatagagtcataagtctctccaatttcaattttaaattcaggttggagtaaatgtagttatttctattttatattcaa |
716 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51350526 |
acagtcaagaattggagggtgaaatagagtcataagtctcttcaatttcaattttaaattcaggttggagtaaatgtagttatttctattttatattcaa |
51350427 |
T |
|
| Q |
717 |
taataccagtactacattattagcataccagtatagattatcacaagtggtagatatcaattaatgcagagatatcttattaattttgtttttactacaa |
816 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51350426 |
taataccagtactacattattagcataccagtatagattatcacaagtggtagatatcaattaatgcagagatatcttattaattttgtttttactacaa |
51350327 |
T |
|
| Q |
817 |
gcatcaagattctactgtgctaaattgacaattgcagtaatatattcaccatcatcatcatgagtgcacattcgcattta-ggtgagtttgatagaatcg |
915 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
51350326 |
gcatcaagattctactgtgctaaattgacaattgcagtaatatattcac---catcactatgagtgcacattcgcatttatggtgaatttgatagaatcg |
51350230 |
T |
|
| Q |
916 |
cggtgtgcttctgtgaatttgacagaaactatactttgcagctctaataaaatcaatgtcactgtgatattct |
988 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51350229 |
cggtgtgcttctgtgaatttgacagaaactatactttgcagctctaataaaatcaatgtcactgtgatattct |
51350157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 43 - 415
Target Start/End: Complemental strand, 51360494 - 51360104
Alignment:
| Q |
43 |
gagaaacttcagccacaact--gtggaaaacagagttgtttgcatgtcacaaaagctttgttcttctacgcttcgatatatacttgcttgcacttggtgg |
140 |
Q |
| |
|
||||||||||||||| |||| |||||||| |||||||||| |||| |||||||||||| ||||||||||||| ||||| |||||||||||||||||| |
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| T |
51360494 |
gagaaacttcagccagaactatgtggaaaaaagagttgtttacatggcacaaaagctttactcttctacgcttcaatata--cttgcttgcacttggtgg |
51360397 |
T |
|
| Q |
141 |
gtggtgaaatcaaaggctgtgttcatgctctaggagctgatcaatttgatgacaagaatccaaaggatcgtctccaactagctagcttctttgattggtt |
240 |
Q |
| |
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||||| ||||| ||| ||||||| |||||||||||| |||||||||||||| | ||||||||| || |||||||||||| |||||||| ||||||| |
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| T |
51360396 |
-tggtggaatcagaggttgtgttcctgctctaggagcagatcaatttgatgatatgaatccaaaagaatatctccaactagcaagcttcttcaattggtt |
51360298 |
T |
|
| Q |
241 |
tctgt-------------------tagcttaggtgccacctttgtagttcatgttagatcacaattcaaatggtacaaaggttttcttatatctctctta |
321 |
Q |
| |
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| ||| ||||||||||| ||| ||||||||| ||||||| || ||| | |||||||||||||||||||||||||||| | |
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| T |
51360297 |
tttgtttagtattacaattggtgctagcttaggtgtcacttttgtagtttatgttagcacaatcttcgattggtacaaaggttttcttatatctctctca |
51360198 |
T |
|
| Q |
322 |
tatgcttctgctgcactaatttgcattgtttctggaaagagattctattgtaccccgaatccaggagggagtccattgttgggtattttacagg |
415 |
Q |
| |
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| | || | ||||||| |||||||||||| ||||||||||||||||| ||| | | ||| || | ||||||||||||| |||||||||||| |
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| T |
51360197 |
tgttctgcctctgcacttatttgcattgttgctggaaagagattctatcgtaaacgaattcctggggagagtccattgttgagtattttacagg |
51360104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 40020292 - 40020263
Alignment:
| Q |
1 |
tctttatatcaactccataaaagagatttg |
30 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
40020292 |
tctttatatcaactccataaaagagatttg |
40020263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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