View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_high_24 (Length: 488)
Name: NF17063_high_24
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_high_24 |
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| [»] scaffold0016 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 25 - 471
Target Start/End: Original strand, 27511618 - 27512076
Alignment:
| Q |
25 |
gtcagcgttctgaggcatgccactagtattaaaaggggcgaaggggctaatgagatggggattggctttaaaatagcggtaagaggggcgaaggacagac |
124 |
Q |
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| T |
27511618 |
gtcagcgttctgaggcatgccactagtattaaaaggggcgaaggggctaatgagatggggattggctttaaaatagcggtaagaggggcgaaggacagac |
27511717 |
T |
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| Q |
125 |
aagacgatggggtaaaggtaagactttgagatgagaccgggggaggagactgtgagagaagagggggcgatggggcgaaggaaagactttgagatgagat |
224 |
Q |
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| T |
27511718 |
aagacgatggggtaaaggtaagactttgagatgagaccgggggaggagactgtgagagaagagggggcgatggggcgaaggaaagactttgagatgagat |
27511817 |
T |
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| Q |
225 |
tggcggaggagacagtaagagaggaaagggtgatggagcgaaggagagaaaagacgatggggagaaggagagactttgagatgtgaccggcagacgggac |
324 |
Q |
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| T |
27511818 |
tggcggagaagacagtaagagaggaaagggcgatggagcgaaggagagaaaagacgatggggagaaggagagactttgagatgtgaccggcagacgggac |
27511917 |
T |
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| Q |
325 |
ggtaatagaggagagtgagtggggatacatatttatatgagggaacgag------------cgatcgtcgaccgtcttggtgttagaagagcggtaagca |
412 |
Q |
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| T |
27511918 |
ggtaagagaggagagtgagtggggatacatatttatatgagggaacgagctatcggagagacgatcggcgactgtcttggggttagaagagcggtaagca |
27512017 |
T |
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| Q |
413 |
ctagaagaagaagaggcgactacagggcgaaggagagggggcatggtgttggtgttaaa |
471 |
Q |
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| T |
27512018 |
ctagaagaagaagaggcgactacagggcgaaggagagggggcatggcgttggtgttaaa |
27512076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 27512158 - 27512210
Alignment:
| Q |
262 |
gcgaaggagagaaaagacgatggggagaaggagagactttgagatgtgaccgg |
314 |
Q |
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| T |
27512158 |
gcgaaggagagaacaaacgatggggcgatggagagactttgagaggagaccgg |
27512210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 77422 - 77329
Alignment:
| Q |
143 |
taagactttgagatgagaccgggggaggagactgtgagagaagagggggcgatggggcgaaggaaagactttgagatgagattggcggaggaga |
236 |
Q |
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| T |
77422 |
taagactttgagatgagaccgggggaggagactgttatagaagagatggcaatggggtgaaggaaatactttgatatgagactggcggaagaga |
77329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 77323 - 77283
Alignment:
| Q |
257 |
atggagcgaaggagagaaaagacgatggggagaaggagaga |
297 |
Q |
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| T |
77323 |
atggagcgaaagagagaaaaaaggatggggagaaggagaga |
77283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 77549 - 77473
Alignment:
| Q |
29 |
gcgttctgaggcatgccactagtattaaaaggggcgaaggggctaatgagatggggattggctttaaaatagcggta |
105 |
Q |
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| T |
77549 |
gcgttttggggcatgccattgatatcaaaagaggcgacagggcttaggagatggggattggctttgaaatagcggta |
77473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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