View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_high_26 (Length: 469)
Name: NF17063_high_26
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 47424645 - 47424403
Alignment:
| Q |
1 |
ttaacagaagtgcaacaacaggtacgtagattagatggtttctgcagtgttgtagatgatttttcgtaaggtcgctgaaaattgatttcaaggttatgct |
100 |
Q |
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| T |
47424645 |
ttaacagaagtgcaccaacaggtacgtagattagatggtttctgcagtgttgtagatgatttttcgtaaggtcgttgaaaattgatttcaaggttatgct |
47424546 |
T |
|
| Q |
101 |
aagaataatccttttttcttctagagaagaggcaacctaggttcagcagcaactgttcgagagataacattaacgatgcgaacactagaactctgaaggt |
200 |
Q |
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| T |
47424545 |
aagaataatccttttttcttctagagaagaggcaacctaggttcagcagcaactgttcgagagataacattaacgatgcgaacactagaactctgaaggt |
47424446 |
T |
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| Q |
201 |
ctaccacagatgaaagtatagggatggatgtaattaggaagta |
243 |
Q |
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| T |
47424445 |
ctaccacagatgaaagtatagggatggatgtaattaggaagta |
47424403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 311 - 448
Target Start/End: Complemental strand, 47424335 - 47424198
Alignment:
| Q |
311 |
accttatattgtacaataacggttaaattttgatagattgttctccaaatgtgattttaaacgatattgttggannnnnnnagtgataataagtcaagtc |
410 |
Q |
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| T |
47424335 |
accttatattgtacaataatggttaaattttgatagattgttctccaaatatgattttaaatgattttgttggatttttttagtgataataagtcaagtc |
47424236 |
T |
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| Q |
411 |
ttaccataagagttttgtaaaaattctttttactcata |
448 |
Q |
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| T |
47424235 |
ttactatacgagttttgtaaaaattctttttactcata |
47424198 |
T |
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