View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_high_29 (Length: 454)
Name: NF17063_high_29
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 35787145 - 35786958
Alignment:
| Q |
1 |
ggacctgataacaacaaattcagataccgtggtgtaagacaacgtagttggggtaaatgggttgctgaaattcgtgaaccacgtaaacgtactcgtaaat |
100 |
Q |
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| T |
35787145 |
ggacctgataacaacaaattcagataccgtggtgtaagacaacgtagttggggtaaatgggttgctgaaattcgtgaaccacgtaaacgtactcgtaaat |
35787046 |
T |
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| Q |
101 |
ggcttggtactttttcaactgctgaagatgctgctaaagcttatgatcgtgctgctattattctctatggttctagggctcagcttaa |
188 |
Q |
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| T |
35787045 |
ggcttggtactttttcaactgctgaagatgctgctaaagcttatgatcgtgctgctattattctctatggttctagggctcagcttaa |
35786958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 278 - 438
Target Start/End: Complemental strand, 35786868 - 35786708
Alignment:
| Q |
278 |
gtcctttacttcctcgtccttctggtttctcagtttacaataattttgtcccatttggtgtttacaataattttcatcatcatcaccaaccagttttcta |
377 |
Q |
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| T |
35786868 |
gtcctttacttcctcgtccttctggtttctcagtttacaataattttgtcccatttggtgtttacaataattttcatcatcatcaccaaccagttttcta |
35786769 |
T |
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| Q |
378 |
taataacaataatggtttagttcattttcatcataaccctcatcaagaaatggtgcaagtg |
438 |
Q |
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| T |
35786768 |
taataacaataatggtttagttcattttcatcataaccctcatcaagaaatggtgcaagtg |
35786708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 25896674 - 25896641
Alignment:
| Q |
48 |
ttggggtaaatgggttgctgaaattcgtgaacca |
81 |
Q |
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| T |
25896674 |
ttggggtaaatgggttgctgagattcgtgaacca |
25896641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 52690554 - 52690586
Alignment:
| Q |
48 |
ttggggtaaatgggttgctgaaattcgtgaacc |
80 |
Q |
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| T |
52690554 |
ttggggtaaatgggttgctgaaatccgtgaacc |
52690586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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