View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17063_high_33 (Length: 428)
Name: NF17063_high_33
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_high_33 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 7 - 412
Target Start/End: Original strand, 29280509 - 29280914
Alignment:
| Q |
7 |
acatcatcaaccttttcattctcaccatctacaccttttcttttttcttcttccgatccacgatcaccagaaccagcaccattaccgtcctctttaacag |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29280509 |
acatcatcaaccttttcattctcaccatctacaccttttcttttttcttcttccgatccacaatcaccaaaaccagcaccattaccgtcctctttaacag |
29280608 |
T |
|
| Q |
107 |
acaaaaccaacgacttcatcggaatgataaataacctaaccaaagtctcatgaggcaaagacatcagcatctgttcccattccttcaactcagtcatcgc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29280609 |
acaaaaccaacgacttcatcggaatgataaataacctaaccaaagtctcatgaggcaaagacatcagcatctgttcacattccttcaactcagtcatcgc |
29280708 |
T |
|
| Q |
207 |
aagcaccaattcaaaagccaaacgatgagtttcatcgctaacaccgctattctccgcgatctgaagtgcatctaagaccatatcactcatgtaaggcttc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29280709 |
aagcaccaattcaaaagccaaacgatgagtttcatcgctaacaccgctattctccgcgatctgaagtgcatctaagaccatatcactcatgtaaggcttc |
29280808 |
T |
|
| Q |
307 |
acaagaagaggttcagcagacacaagcttaaccaactctgcaaaagcgcttttgaagtagcttctttcatatccttgcaagagtgaaaatacaccgacca |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29280809 |
acaagaagaggttcagcagacacaagcttaaccaactctgcaaaagcgcttttgaagtagcttctttcatatccttgcaagagtgaaaatacaccgacca |
29280908 |
T |
|
| Q |
407 |
tcatgg |
412 |
Q |
| |
|
|||||| |
|
|
| T |
29280909 |
tcatgg |
29280914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University