View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_high_34 (Length: 428)
Name: NF17063_high_34
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 402
Target Start/End: Original strand, 4996410 - 4996793
Alignment:
| Q |
17 |
aataatgctttaccccttacactctacctttggctgtgtcttgttcttcacttatggtttctcatgcaaaattcttattgctttcaagtattcacttttt |
116 |
Q |
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| T |
4996410 |
aataatgctttaccccttacactctacctttggctgtgtcttgttcttcacttatggtttctcatgcaaaattcttattgatttcaagtaatcacttttt |
4996509 |
T |
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| Q |
117 |
caacttttcaaaagaatccaaatcttaatcacgtttccccctccactttcaaacctttttccaaccgttcatcattgattgcacacttttctccataata |
216 |
Q |
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| T |
4996510 |
caacttttcaaaagaatccaaatcttaatcacgtttccccctccactttcaaacctttttccaaccgttcatcattgattgcacacttttctccataata |
4996609 |
T |
|
| Q |
217 |
atcccnnnnnnnnncaagaccttttttgttactatcttcaagttcaacaactaaagtgaatcttgtgaactgtctctatcttcatgcatgaataagagga |
316 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4996610 |
atccc--aaaaaatcaagaccttttttgttactatcttcaagttcaacaactaaagtgaatcttgtgaactgtctctatcttcatgcatgaataagagga |
4996707 |
T |
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| Q |
317 |
gcttctacttattcacgaggaaaatcactaagaagtgtgtgacgcatactaccaaacttcagcatcttcaactatacaaatacaaa |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4996708 |
gcttctacttattcacgaggaaaatcactaagaagtgtgtgactcatactaccaaactttagcatcttcaactatacaaatacaaa |
4996793 |
T |
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