View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17063_high_4 (Length: 843)

Name: NF17063_high_4
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17063_high_4
NF17063_high_4
[»] chr5 (1 HSPs)
chr5 (17-828)||(4996410-4997221)


Alignment Details
Target: chr5 (Bit Score: 724; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 724; E-Value: 0
Query Start/End: Original strand, 17 - 828
Target Start/End: Original strand, 4996410 - 4997221
Alignment:
Q  17 aataatgctttaccccttacactctacctttggctgtgtcttgttcttcacttatggtttctcatgcaaaattcttattgctttcaagtattcacttttt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  4996410 aataatgctttaccccttacactctacctttggctgtgtcttgttcttcacttatggtttctcatgcaaaattcttattgatttcaagtaatcacttttt 4996509  T
Q  117 caacttttcaaaagaatccaaatcttaatcacgtttccccctccactttcaaacctttttccaaccgttcatcattgattgcacacttttctccataata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996510 caacttttcaaaagaatccaaatcttaatcacgtttccccctccactttcaaacctttttccaaccgttcatcattgattgcacacttttctccataata 4996609  T
Q  217 atcccnnnnnnnnncaagaccttttttgttactatcttcaagttcaacaactaaagtgaatcttgtgaactgtctctatcttcatgcatgaataagagga 316  Q
    |||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996610 atcccaaaaaat--caagaccttttttgttactatcttcaagttcaacaactaaagtgaatcttgtgaactgtctctatcttcatgcatgaataagagga 4996707  T
Q  317 gcttctacttattcacgaggaaaatcactaagaagtgtgtgacgcatactaccaaacttcagcatcttcaactatacaaatacaaaattaacaccccttc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  4996708 gcttctacttattcacgaggaaaatcactaagaagtgtgtgactcatactaccaaactttagcatcttcaactatacaaatacaaa-ttaacaccccttc 4996806  T
Q  417 aaaaaa-catgatcattctcatcctctcacacacactaccaaaa--attcacaacatgaaaaaactcattttcattcttctcttttcactactatgttca 513  Q
    |||||| || ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4996807 aaaaaaacacgatcattctcatcctctcacacacactaccaaaaaaattcacaacatgaaaaaactcattttcattcttctcttttcactagtatgttca 4996906  T
Q  514 aatggaaccaccttttcactctcaagagactatgaaattcttcttcatgtaaagaacacacaaattgatgacaaaaacaaaagtctcaatgattggcttc 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996907 aatggaaccaccttttcactctcaagagactatgaaattcttcttcatgtaaagaacacacaaattgatgacaaaaacaaaagtctcaatgattggcttc 4997006  T
Q  614 caaacacagatcataatccttgtaactggagaggcataacctgcgattcgtggaataaatccgttgtatcaatcgacctcacagaaaccggtatttatgg 713  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4997007 caaacacagatcataatccttgtaactggagaggcataacctgcgattcgcggaataaatccgttgtatcaatcgacctcacagaaaccggtatttatgg 4997106  T
Q  714 tgattttccatctaatttctgtcatattccaacactccaaaatctttcacttgctaccaattttcttggtaatgctatttcctcacattccatgctaccc 813  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4997107 tgattttccatctaatttctgtcatattccaacactccaaaatctttcacttgctacgaattttcttggtaatgctatttcctcacattccatgctaccc 4997206  T
Q  814 tgctcccaccttcat 828  Q
    |||||||||||||||    
T  4997207 tgctcccaccttcat 4997221  T

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