View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_high_41 (Length: 407)
Name: NF17063_high_41
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 16951425 - 16951169
Alignment:
| Q |
19 |
tgaatgcctttatagagagtgtggatgatacggaagaggcaattctcgcgtaaaatgtctttgatgtcttgaatcaacaatgtacatgcttatgaaagct |
118 |
Q |
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| T |
16951425 |
tgaatgcctttatagagagtgtggatgatacggaagaggcaattctcgcgtaaaatgtctttgatgtcttgaatcaacaacgtacatgcttatgaaaacc |
16951326 |
T |
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| Q |
119 |
gttagatagcaagtcaataagatttagaccggggaaggagttgatgcaacaacattgaataatcgagacacatctccttcgcaagagctataagccttcg |
218 |
Q |
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| T |
16951325 |
gttagatagcaagtcaataagatttagacaggggaagaagttgatgcaacaacattgaataatcgagacacatctccttcgcaagagctataagccttcg |
16951226 |
T |
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| Q |
219 |
atgaatgccataaagttcagcttaaaggatgtcagttgaacgctcataatataatga |
275 |
Q |
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| T |
16951225 |
atgaatgccataaagttcagcttaaaggatgtcagttgaacgctcataatataatga |
16951169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 45314059 - 45314105
Alignment:
| Q |
51 |
gaagaggcaattctcgcgtaaaatgtctttgatgtcttgaatcaaca |
97 |
Q |
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| T |
45314059 |
gaagagacaattctcacgtaacaagtctttgatgtcttgaatcaaca |
45314105 |
T |
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