View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_high_45 (Length: 386)
Name: NF17063_high_45
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_high_45 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 23 - 386
Target Start/End: Complemental strand, 30181640 - 30181273
Alignment:
| Q |
23 |
aaatgttatggcttgcattcccacattaattgctgtttctttt-tcttgttcatggatatccagaactctaaggatgattgtgattgtcctcaaaatttg |
121 |
Q |
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| T |
30181640 |
aaatgttatggcttgcattctcac----tttgctgttttttttctcttgttcatgaatatccagagctctaaggatgattgtgtttgtcctcaaaacttg |
30181545 |
T |
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| Q |
122 |
attgaaggctcgagtggatgattcgtcgcaaccacctggtaatttagaactagcacattgggctttttatttattataatttcatgttcttcaatatttt |
221 |
Q |
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| T |
30181544 |
attgaaggctcaagtagatgattcgtctcaaccacatggtaatttagaactagcacattgggctttttatttattat-atttcatgttcttcaataattt |
30181446 |
T |
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| Q |
222 |
tgtgttagtttctttgaca------attattctttttctgtcattttgaaaattattcatt--ttctgtttcccactgtaggggggtgtatccatatgtt |
313 |
Q |
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| T |
30181445 |
tgtgttagtttctttggcatacattattatcctttttccgtcattttgaaaattattctttcattctgtttcccactgcaggggggtgtatccatatgtt |
30181346 |
T |
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| Q |
314 |
ttgggtgtgaggctaatcggctaaactctaatggcacgaggcgtttacattcatcatcatgtatcagtgcaat |
386 |
Q |
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| T |
30181345 |
ttgtgtgcgaggctaatcggctaaactcaaatggcatgaagcgtttacaatcatcatcatgtatcagtgcaat |
30181273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 56 - 188
Target Start/End: Original strand, 30282231 - 30282363
Alignment:
| Q |
56 |
tgtttctttttcttgttcatggatatccagaactctaaggatgattgtgattgtcctcaaaatttgattgaaggctcgagtggatgattcgtcgcaacca |
155 |
Q |
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| T |
30282231 |
tgttgctttttcttgtttatgaatatccagaactctaaggatgaatgagtttgtcctcaaaatttgaatgaaggctcaagtcgataattcctcgcaacca |
30282330 |
T |
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| Q |
156 |
cctggtaatttagaactagcacattgggctttt |
188 |
Q |
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| T |
30282331 |
cctggtaattcagaatcagcacattgggctttt |
30282363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 30070765 - 30070806
Alignment:
| Q |
61 |
ctttttcttgttcatggatatccagaactctaaggatgattg |
102 |
Q |
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| T |
30070765 |
ctttttcttgtttatgaatatccagaactctaaggatgattg |
30070806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 30177552 - 30177592
Alignment:
| Q |
79 |
tatccagaactctaaggatgattgtgattgtcctcaaaatt |
119 |
Q |
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| T |
30177552 |
tatccagaactctaagggtgattgagtttgtcctcaaaatt |
30177592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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