View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_high_50 (Length: 366)
Name: NF17063_high_50
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_high_50 |
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| [»] scaffold0021 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: scaffold0021 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 161559 - 161194
Alignment:
| Q |
1 |
cctaaacttgggtgggatttattatcaataagcatgtttaataagttatgctattgcactaatatttgtcataacccgatgcaaaaatttcattacccca |
100 |
Q |
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| T |
161559 |
cctaaacttgggtggaatttattatcaataagcatgtttaataagttatgctattgcactaatatttgtcataacccgatgcaaaaatttcattacccca |
161460 |
T |
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| Q |
101 |
tgaaaatatacacacacctctgatcacaaatacctctcaaacaacataacaacctaagataaagaatatatatcagcttatgaaattacaattattttaa |
200 |
Q |
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| T |
161459 |
tgaaaatatacacacacctctgatcacaaatacctctcaaacaacataacaacctaagataaagaatatatatcagcttatgaaattacaattattttaa |
161360 |
T |
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| Q |
201 |
aatagatatatcttatcacataaaatttgaagtatacatatatcttataagttactgcgggaccttccaaatgtaagtagcttctatagagaacaatttt |
300 |
Q |
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| T |
161359 |
aatagatatatcttatcacataaaatttgaagtatacatatatcttataagttactgcgggaccttccaaatgtaagtagcttctatagagaacaatttt |
161260 |
T |
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| Q |
301 |
actcgataaagtgtataaaagtgatcatatataacatatattttttggtggtggccggggtttgaa |
366 |
Q |
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| T |
161259 |
actcgataaagtgtataaaagtgatcatacataacatatattttttggtggtggtcggggtttgaa |
161194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 366
Target Start/End: Complemental strand, 6489090 - 6489060
Alignment:
| Q |
336 |
atatattttttggtggtggccggggtttgaa |
366 |
Q |
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| T |
6489090 |
atatattttttggtggtggccggggtttgaa |
6489060 |
T |
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