View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_high_55 (Length: 352)
Name: NF17063_high_55
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_high_55 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 13 - 335
Target Start/End: Complemental strand, 47928468 - 47928146
Alignment:
| Q |
13 |
aatatgaaatcaatgttggaatattccaggtaataattacaaagtagaagcgctaattgtagtacaaaataattgttattttaatttctcttaatatgtt |
112 |
Q |
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| T |
47928468 |
aatatgaaatcaatgttggaatatttcaggtaataattacaaagtagaagcgctaattgtagtacaaaatgattgttattttaatttctcttaatatgtt |
47928369 |
T |
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| Q |
113 |
ggcttgatttaggataatgcccaaaactggtggcttaaagtgaagaataacatccctgtaggttattggccagcagagttattaggtaatttaagacaca |
212 |
Q |
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| T |
47928368 |
ggcttgatttaggataatgcccaaaactggtggtttaaagtgaagaataacatccctgtaggttattggccagcagagttattaggtaatttaagacaca |
47928269 |
T |
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| Q |
213 |
gtgcaacattgattcaatggggtggacaagtgtttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatgggtagtggagaggcagcaag |
312 |
Q |
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| T |
47928268 |
gtgcaacattgattcaatggggtggacaagtgtttagttatgaggtcaaaacaaaacctcctcacacaggaacacagatgggtagtggagatgcagcaag |
47928169 |
T |
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| Q |
313 |
tggtcgatttggggccgcatgtt |
335 |
Q |
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| T |
47928168 |
tggtcgatttggggccgcatgtt |
47928146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 81 - 303
Target Start/End: Complemental strand, 47909472 - 47909250
Alignment:
| Q |
81 |
ataattgttattttaatttctcttaatatgttggcttgatttaggataatgcccaaaactggtggcttaaagtgaagaataacatccctgtaggttattg |
180 |
Q |
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| T |
47909472 |
ataattgtaattttaatttctcttaatatgtttgtttgatttaggataataaccaaaactggtggcttaaaattaagaataatataccagtaggttattg |
47909373 |
T |
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| Q |
181 |
gccagcagagttattaggtaatttaagacacagtgcaacattgattcaatggggtggacaagtgtttagttatgcggttaaaacaaaacctcctcacaca |
280 |
Q |
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| T |
47909372 |
gccagctgagttatttggtaatttgaaacacagtgcaacgacggttcaatggggtggacaagtatttagttatgcggttaaaacaaaacctcctcacaca |
47909273 |
T |
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| Q |
281 |
ggaacacaaatgggtagtggaga |
303 |
Q |
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| T |
47909272 |
ggaacacaaatggggagtggaga |
47909250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 136 - 335
Target Start/End: Complemental strand, 47935779 - 47935580
Alignment:
| Q |
136 |
aaactggtggcttaaagtgaagaataacatccctgtaggttattggccagcagagttattaggtaatttaagacacagtgcaacattgattcaatggggt |
235 |
Q |
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| T |
47935779 |
aaactggtggcttagagtgaaggataccatcatggtaggttattggccagcggaattattgggtaatttaagacacagtgcaacattggttcaatgggga |
47935680 |
T |
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| Q |
236 |
ggacaagtgtttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatgggtagtggagaggcagcaagtggtcgatttggggccgcatgtt |
335 |
Q |
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| T |
47935679 |
ggacaagtgtttagttatcaggtcaaaactacccctcctcacacaggaacacagatgggtagtggagaagaagcaagtggtcgatttgggttcgcatgtt |
47935580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 137 - 335
Target Start/End: Complemental strand, 47946920 - 47946722
Alignment:
| Q |
137 |
aactggtggcttaaagtgaagaataacatccctgtaggttattggccagcagagttattaggtaatttaagacacagtgcaacattgattcaatggggtg |
236 |
Q |
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| T |
47946920 |
aactggtggcttagaatgaaggataaaatcattgtaggttattggccagcagcgatagtgggtaacttacaacatagtgcaacattggttcaatggggtg |
47946821 |
T |
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| Q |
237 |
gacaagtgtttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatgggtagtggagaggcagcaagtggtcgatttggggccgcatgtt |
335 |
Q |
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| T |
47946820 |
gacaagtgtttagttataatgtgaaaacaacccctcctcacacaggaacacaaatgggtagtggagaagcagcaagtggtcgatttgggttcgcatgtt |
47946722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 119 - 303
Target Start/End: Complemental strand, 47918597 - 47918416
Alignment:
| Q |
119 |
atttaggataatgcccaaaactggtggcttaaagtgaagaataacatccctgtaggttattggccagcagagttattaggtaatttaagacacagtgcaa |
218 |
Q |
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| T |
47918597 |
atttaggataattctggaaactggtggcttaaagtgaagaataacattcctgtaggttattggccaaaagagttagtgagtaacctacaaagttctgcat |
47918498 |
T |
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| Q |
219 |
cattgattcaatggggtggacaagtgtttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatgggtagtggaga |
303 |
Q |
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| T |
47918497 |
cattggttcaatggggtggacaagtgtttagttatgaggtcaa---aaaaactcctcacactggaacacaaatgggtagtggaga |
47918416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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