View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_high_57 (Length: 347)
Name: NF17063_high_57
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_high_57 |
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Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 12 - 331
Target Start/End: Complemental strand, 13693415 - 13693096
Alignment:
| Q |
12 |
agaatgtgtttgcaagaatccaatctgctttaccaatgttggaaaattgatccacaactacgtcaaatataattggataggatccatatttatacaagaa |
111 |
Q |
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| T |
13693415 |
agaatgtgtttgcaagaatccaatctgctttaccaatgttggaaaattgattcacaactacgtcaaatataattggataggatccatatttatacaagaa |
13693316 |
T |
|
| Q |
112 |
agaaggcaaatccccttgagcaagttttggcaatccaggtaacaaatactcagattgtgaaagtggcaattcaatcaacttctgatgagtatgaaagtat |
211 |
Q |
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| T |
13693315 |
agaaggcaaatccccttgagcaagttttggcaatccaggtaacaaatactcagattgtgaaattggcaattcaatcaacttctgatgagtatgaaagtat |
13693216 |
T |
|
| Q |
212 |
atgctattaacagaacaagattgagtgaaaaatggaacaccaagtagcccaaaattcttggcaacatcaagagcccaaggcataaatgcatcaaagataa |
311 |
Q |
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| T |
13693215 |
atgctattaacagaacaagattgagtgaaaaatggaacaccaagtagcccaaaattcttggcaacatcaagagcccaaggcataaatgcatcaaagataa |
13693116 |
T |
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| Q |
312 |
cgcaatttggtggggttttt |
331 |
Q |
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|||||||||||||||||||| |
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| T |
13693115 |
cgcaatttggtggggttttt |
13693096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 321
Target Start/End: Original strand, 13672963 - 13673270
Alignment:
| Q |
14 |
aatgtgtttgcaagaatccaatctgctttaccaatgttggaaaattgatccacaactacgtcaaatataattggataggatccatatttatacaagaaag |
113 |
Q |
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| T |
13672963 |
aatgtgtttgcaagaatccaatcagctttaccaatgtttgaaaattgattgacaactatatcaaagtagcctggataagatccatatttatacaaaaaag |
13673062 |
T |
|
| Q |
114 |
aaggcaaatccccttgagcaagttttggcaatccaggtaacaaatactcagattgtgaaagtggcaattcaatcaacttctgatgagtatgaaagtatat |
213 |
Q |
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| T |
13673063 |
aaggcaaatccccttgagcaagttttggcaatccaggtaacaaatactcagattgtgtaagtggcaactctatcaacttctcatgagtatgaaagtatat |
13673162 |
T |
|
| Q |
214 |
gctattaacagaacaagattgagtgaaaaatggaacaccaagtagcccaaaattcttggcaacatcaagagcccaaggcataaatgcatcaaagataacg |
313 |
Q |
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||| |||||||||||||||||||||||||||| |||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13673163 |
gctgttaacagaacaagattgagtgaaaaatgcaacaccaactagtccaaaactcttggcaacatcaagagcccaaggcataaatgcatcaaagataaca |
13673262 |
T |
|
| Q |
314 |
caatttgg |
321 |
Q |
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| T |
13673263 |
caatttgg |
13673270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 13686944 - 13686642
Alignment:
| Q |
19 |
gtttgcaagaatccaatctgctttaccaatgttggaaaattgatccacaactacgtcaaa-tataattggataggatccatatttatacaagaaagaagg |
117 |
Q |
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| T |
13686944 |
gtttgcaagaatccaatcagctttaccaatattcgcaaattgattgacaactatgtcaaagtatccc-ggataggatccatatttatacaagaaagaagg |
13686846 |
T |
|
| Q |
118 |
caaatccccttgagcaagttttggcaatccaggtaacaaatactcagattgtgaaagtggcaattcaatcaacttctgatgagtatgaaagtatatgcta |
217 |
Q |
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| T |
13686845 |
caaatcccctggagcaagttttggcaatccaggtaacaaatactcagattgtgtaagtggcaactctatcaacttctcatgagtatgatagtatacacta |
13686746 |
T |
|
| Q |
218 |
ttaacagaacaagattgagtgaaaaatggaacaccaagtagcccaaaattcttggcaacatcaagagcccaaggcataaatgcatcaaagataacgcaat |
317 |
Q |
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|||||||||||||||||||| ||||| | |||||||| || |||||| |||| ||||||||||| ||||||| | |||||||||||||||||| |||| |
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| T |
13686745 |
ttaacagaacaagattgagtaaaaaaagcaacaccaactaatccaaaactctttccaacatcaagaacccaaggtagaaatgcatcaaagataacacaat |
13686646 |
T |
|
| Q |
318 |
ttgg |
321 |
Q |
| |
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|||| |
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| T |
13686645 |
ttgg |
13686642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 13725950 - 13725987
Alignment:
| Q |
86 |
ggataggatccatatttatacaagaaagaaggcaaatc |
123 |
Q |
| |
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||||||| |||||||| ||||||||||||||||||||| |
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| T |
13725950 |
ggataggttccatattgatacaagaaagaaggcaaatc |
13725987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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