View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17063_high_59 (Length: 346)

Name: NF17063_high_59
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17063_high_59
NF17063_high_59
[»] chr1 (12 HSPs)
chr1 (12-346)||(29861263-29861596)
chr1 (220-318)||(36813813-36813911)
chr1 (266-346)||(30892157-30892237)
chr1 (212-315)||(25843145-25843248)
chr1 (305-346)||(14614400-14614442)
chr1 (234-315)||(25870267-25870348)
chr1 (219-280)||(36816983-36817044)
chr1 (235-312)||(42175153-42175230)
chr1 (302-346)||(30892094-30892138)
chr1 (302-343)||(36816996-36817038)
chr1 (302-346)||(15470943-15470987)
chr1 (302-346)||(21761153-21761197)
[»] chr8 (10 HSPs)
chr8 (202-282)||(29795787-29795864)
chr8 (223-318)||(24628339-24628433)
chr8 (302-346)||(28009178-28009223)
chr8 (302-346)||(28066481-28066526)
chr8 (221-279)||(28009176-28009234)
chr8 (221-279)||(28066479-28066537)
chr8 (304-346)||(30201855-30201897)
chr8 (232-277)||(27559139-27559184)
chr8 (302-346)||(26488752-26488796)
chr8 (213-281)||(34743227-34743295)
[»] chr5 (11 HSPs)
chr5 (234-312)||(10979033-10979111)
chr5 (232-345)||(18936645-18936757)
chr5 (303-346)||(7148421-7148464)
chr5 (203-245)||(17476193-17476235)
chr5 (305-346)||(17476089-17476130)
chr5 (197-280)||(17441253-17441336)
chr5 (303-346)||(17441348-17441391)
chr5 (311-346)||(38299793-38299828)
chr5 (303-345)||(7172431-7172473)
chr5 (304-346)||(28717462-28717504)
chr5 (302-345)||(7148390-7148434)
[»] chr7 (2 HSPs)
chr7 (266-338)||(36968422-36968494)
chr7 (301-346)||(27318609-27318655)
[»] chr2 (9 HSPs)
chr2 (286-346)||(37828551-37828611)
chr2 (213-318)||(12764995-12765099)
chr2 (302-346)||(37828630-37828674)
chr2 (200-259)||(37828476-37828535)
chr2 (305-346)||(4865562-4865603)
chr2 (231-346)||(41104547-41104663)
chr2 (200-247)||(4865486-4865533)
chr2 (300-346)||(5847629-5847676)
chr2 (305-346)||(745699-745741)
[»] chr4 (4 HSPs)
chr4 (266-317)||(2387786-2387837)
chr4 (200-247)||(12828576-12828624)
chr4 (199-278)||(26310345-26310425)
chr4 (200-247)||(53801528-53801576)
[»] chr3 (3 HSPs)
chr3 (233-318)||(34982129-34982213)
chr3 (219-278)||(16236266-16236325)
chr3 (304-343)||(16236281-16236321)
[»] chr6 (5 HSPs)
chr6 (302-346)||(5449594-5449638)
chr6 (302-346)||(5451154-5451198)
chr6 (232-285)||(446252-446305)
chr6 (305-346)||(1706724-1706765)
chr6 (307-346)||(1860420-1860460)


Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 12 - 346
Target Start/End: Original strand, 29861263 - 29861596
Alignment:
Q  12 agaacctgtggggtttggcgtcgacccctaccagagcaataataattttatcaaattggactgtcataacatcataaattatatgttcacactcacttga 111  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  29861263 agaacatgtggggtttggcgtcgacccctaccagagcaataataattttattcaattggactgtcataacatcataaattatatgttcacactcacttga 29861362  T
Q  112 atggcggtccttacatgtcatatgcttgaaggttgtggaccattataaatgtacttagagaattgctcttatcccaacnnnnnnncgctcactctcatac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  29861363 atggcggtccttacatgtcatatgcttgaaggttgtggaccattataaatgtacttagagaattgctcttatcccaac-aaaaaacgctcactctcatac 29861461  T
Q  212 aaactggccaaaatacctccgcgtgagttaactcacacaggtgtataacccagtgtgacttaagtcacgctgtgcacatgacttaagtcggcgtgagtta 311  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  29861462 aaactagccaaaatacctccgcgtgagttaactcacacaggtgtataacccagtgtgacttaagtcacgctatgcacatgacttaagtcagcgtgagtta 29861561  T
Q  312 actcacgcaggttataacccagcgtgagttaactc 346  Q
    |||||||||||||||||||||||||||||||||||    
T  29861562 actcacgcaggttataacccagcgtgagttaactc 29861596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 220 - 318
Target Start/End: Original strand, 36813813 - 36813911
Alignment:
Q  220 caaaatacctccgcgtgagttaactcacacaggtgtataacccagtgtgacttaagtcacgctgtgcacatgacttaagtcggcgtgagttaactcacg 318  Q
    ||||||||| ||||||||||||||| || || || |||||||||| |||||||||||||||||  |||||||||||||||| ||||||||||| |||||    
T  36813813 caaaatacccccgcgtgagttaactgacgcaagtatataacccagcgtgacttaagtcacgctcggcacatgacttaagtcagcgtgagttaaatcacg 36813911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 266 - 346
Target Start/End: Complemental strand, 30892237 - 30892157
Alignment:
Q  266 gtgacttaagtcacgctgtgcacatgacttaagtcggcgtgagttaactcacgcaggttataacccagcgtgagttaactc 346  Q
    |||||||||||||||||    || | ||||||||| | ||||||||||||||| ||||||||||| |||||||||||||||    
T  30892237 gtgacttaagtcacgctcgatacctaacttaagtcagtgtgagttaactcacgtaggttataacctagcgtgagttaactc 30892157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 315
Target Start/End: Original strand, 25843145 - 25843248
Alignment:
Q  212 aaactggccaaaatacctccgcgtgagttaactcacacaggtgtataacccagtgtgacttaagtcacgctgtgcacatgacttaagtcggcgtgagtta 311  Q
    |||||| ||||||||||| |  |||||||||||||| |||| |||||  | || |||  ||||||||| ||  ||| |||||||||||| ||||||||||    
T  25843145 aaactgtccaaaatacctgcatgtgagttaactcacgcaggcgtatactctagcgtggtttaagtcactctcggcatatgacttaagtcagcgtgagtta 25843244  T
Q  312 actc 315  Q
    ||||    
T  25843245 actc 25843248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 14614442 - 14614400
Alignment:
Q  305 tgagttaactcacgcaggttat-aacccagcgtgagttaactc 346  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  14614442 tgagttaactcacgcaggttataaacccagcgtgagttaactc 14614400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 315
Target Start/End: Original strand, 25870267 - 25870348
Alignment:
Q  234 gtgagttaactcacacaggtgtataacccagtgtgacttaagtcacgctgtgcacatgacttaagtcggcgtgagttaactc 315  Q
    ||||||||||||||||||| |||||  | || |||| ||||||||| ||  ||| |||||||||||| || |||||||||||    
T  25870267 gtgagttaactcacacaggcgtatactctagcgtgatttaagtcactctcggcatatgacttaagtcagcatgagttaactc 25870348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 36816983 - 36817044
Alignment:
Q  219 ccaaaatacctccgcgtgagttaactcacacaggtgtataacccagtgtgacttaagtcacg 280  Q
    |||||||||  |||||||||||||||||| || || |||||||||| |||| ||||||||||    
T  36816983 ccaaaatactcccgcgtgagttaactcacgcatgtatataacccagcgtgagttaagtcacg 36817044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 42175153 - 42175230
Alignment:
Q  235 tgagttaactcacacaggtgtataacccagtgtgacttaagtcacgctgtgcacatgacttaagtcggcgtgagttaa 312  Q
    |||||||| |||  |||||||||||| ||| ||||||||||||||| |  ||| |||||||||||  |||||||||||    
T  42175153 tgagttaattcatgcaggtgtataactcagcgtgacttaagtcacgttcggcatatgacttaagttagcgtgagttaa 42175230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 30892138 - 30892094
Alignment:
Q  302 gcgtgagttaactcacgcaggttataacccagcgtgagttaactc 346  Q
    ||||||||||||||| | ||||||||||||||||| |||||||||    
T  30892138 gcgtgagttaactcatgtaggttataacccagcgtaagttaactc 30892094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 36816996 - 36817038
Alignment:
Q  302 gcgtgagttaactcacgcaggt-tataacccagcgtgagttaa 343  Q
    ||||||||||||||||||| || ||||||||||||||||||||    
T  36816996 gcgtgagttaactcacgcatgtatataacccagcgtgagttaa 36817038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 15470943 - 15470987
Alignment:
Q  302 gcgtgagttaactcacgcaggttataacccagcgtgagttaactc 346  Q
    ||||||||||||||||||| ||  ||| |||||||||||||||||    
T  15470943 gcgtgagttaactcacgcatgtgttaaaccagcgtgagttaactc 15470987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 21761197 - 21761153
Alignment:
Q  302 gcgtgagttaactcacgcaggttataacccagcgtgagttaactc 346  Q
    ||||||||||||||||||| ||  ||| |||||||||||||||||    
T  21761197 gcgtgagttaactcacgcatgtgttaaaccagcgtgagttaactc 21761153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 202 - 282
Target Start/End: Original strand, 29795787 - 29795864
Alignment:
Q  202 actctcatacaaactggccaaaatacctccgcgtgagttaactcacacaggtgtataacccagtgtgacttaagtcacgct 282  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||   |||||||||||||||||    
T  29795787 actctcatacaaactgaccaaaatacctccgcgtgagttaactcacaaatgtgtataaccc---gtgacttaagtcacgct 29795864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 318
Target Start/End: Original strand, 24628339 - 24628433
Alignment:
Q  223 aatacctccgcgtgagttaactcacacaggtgtataacccagtgtgacttaagtcacgctgtgcacatgacttaagtcggcgtgagttaactcacg 318  Q
    |||||| | ||||||||||||||||  ||||||||||||||| ||||||||||||| |||    |||||||||||||| || ||||||||||||||    
T  24628339 aatacccctgcgtgagttaactcact-aggtgtataacccagcgtgacttaagtcatgctcgatacatgacttaagtcagcttgagttaactcacg 24628433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 28009223 - 28009178
Alignment:
Q  302 gcgtgagttaactcacgcaggt-tataacccagcgtgagttaactc 346  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  28009223 gcgtgagttaactcacgcaggtgtataacccagcgtgagttaactc 28009178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 28066526 - 28066481
Alignment:
Q  302 gcgtgagttaactcacgcaggt-tataacccagcgtgagttaactc 346  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  28066526 gcgtgagttaactcacgcaggtgtataacccagcgtgagttaactc 28066481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 28009234 - 28009176
Alignment:
Q  221 aaaatacctccgcgtgagttaactcacacaggtgtataacccagtgtgacttaagtcac 279  Q
    |||||||| | |||||||||||||||| |||||||||||||||| |||| |||| ||||    
T  28009234 aaaatacccctgcgtgagttaactcacgcaggtgtataacccagcgtgagttaactcac 28009176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 28066537 - 28066479
Alignment:
Q  221 aaaatacctccgcgtgagttaactcacacaggtgtataacccagtgtgacttaagtcac 279  Q
    |||||||| | |||||||||||||||| |||||||||||||||| |||| |||| ||||    
T  28066537 aaaatacccctgcgtgagttaactcacgcaggtgtataacccagcgtgagttaactcac 28066479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 346
Target Start/End: Original strand, 30201855 - 30201897
Alignment:
Q  304 gtgagttaactcacgcaggttataacccagcgtgagttaactc 346  Q
    |||||||||||||||||||||||||  ||||||||||||||||    
T  30201855 gtgagttaactcacgcaggttataagtcagcgtgagttaactc 30201897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 27559139 - 27559184
Alignment:
Q  232 gcgtgagttaactcacacaggtgtataacccagtgtgacttaagtc 277  Q
    ||||||||||| ||||  |||||||||||||| |||||||||||||    
T  27559139 gcgtgagttaattcacgtaggtgtataacccaatgtgacttaagtc 27559184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 26488752 - 26488796
Alignment:
Q  302 gcgtgagttaactcacgcaggttataacccagcgtgagttaactc 346  Q
    ||||| ||||||||||||||||| ||||| ||||||| |||||||    
T  26488752 gcgtgggttaactcacgcaggttgtaacctagcgtgacttaactc 26488796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 281
Target Start/End: Original strand, 34743227 - 34743295
Alignment:
Q  213 aactggccaaaatacctccgcgtgagttaactcacacaggtgtataacccagtgtgacttaagtcacgc 281  Q
    ||||| |||||||||  |||||||||||||||||  ||| |||||||||||  |||| |||| ||||||    
T  34743227 aactgtccaaaatactcccgcgtgagttaactcatgcagatgtataacccaacgtgagttaactcacgc 34743295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 10979111 - 10979033
Alignment:
Q  234 gtgagttaactcacacaggtgtataacccagtgtgacttaagtcacgctgtgcacatgacttaagtcggcgtgagttaa 312  Q
    |||||||||||||| | | ||||||||| || |||||||||||||||||   |||||||||||||||||||||||||||    
T  10979111 gtgagttaactcacgcggatgtataaccgagcgtgacttaagtcacgcttgacacatgacttaagtcggcgtgagttaa 10979033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 345
Target Start/End: Complemental strand, 18936757 - 18936645
Alignment:
Q  232 gcgtgagttaactcacacaggtgtataacccagtgtgacttaagtcacgctgtgcacatgacttaagtcggcgtgagttaactcacgcaggttataaccc 331  Q
    |||||||||||||||| || ||||   |  ||| ||||||||||||||||| ||||| | |||| ||||  |||||||||||||||| |||||||||| |    
T  18936757 gcgtgagttaactcacgcaagtgttacatgcagcgtgacttaagtcacgct-tgcacctaacttgagtcaacgtgagttaactcacgtaggttataacac 18936659  T
Q  332 agcgtgagttaact 345  Q
    | ||||||||||||    
T  18936658 atcgtgagttaact 18936645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 7148464 - 7148421
Alignment:
Q  303 cgtgagttaactcacgcaggttataacccagcgtgagttaactc 346  Q
    |||||||||||||||| |||||||||| ||||||||||||||||    
T  7148464 cgtgagttaactcacgtaggttataactcagcgtgagttaactc 7148421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 17476235 - 17476193
Alignment:
Q  203 ctctcatacaaactggccaaaatacctccgcgtgagttaactc 245  Q
    ||||||||||||||| ||||||||||||| |||||||||||||    
T  17476235 ctctcatacaaactgaccaaaatacctccacgtgagttaactc 17476193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 17476089 - 17476130
Alignment:
Q  305 tgagttaactcacgcaggttataacccagcgtgagttaactc 346  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  17476089 tgagttaactcacgtaggttataatccagcgtgagttaactc 17476130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 280
Target Start/End: Original strand, 17441253 - 17441336
Alignment:
Q  197 cgctcactctcatacaaactggccaaaatacctccgcgtgagttaactcacacaggtgtataacccagtgtgacttaagtcacg 280  Q
    ||||||||| ||||||||||| | |||||||||| | |||||||||||||| || ||||  ||  ||  |||||||||||||||    
T  17441253 cgctcactcccatacaaactgacaaaaatacctctgtgtgagttaactcacgcatgtgttaaattcaacgtgacttaagtcacg 17441336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 17441348 - 17441391
Alignment:
Q  303 cgtgagttaactcacgcaggttataacccagcgtgagttaactc 346  Q
    |||||||||||||| ||||||||||||  |||||||||||||||    
T  17441348 cgtgagttaactcatgcaggttataacatagcgtgagttaactc 17441391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 346
Target Start/End: Complemental strand, 38299828 - 38299793
Alignment:
Q  311 aactcacgcaggttataacccagcgtgagttaactc 346  Q
    ||||||||||||||||||| ||||||||||||||||    
T  38299828 aactcacgcaggttataactcagcgtgagttaactc 38299793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 7172431 - 7172473
Alignment:
Q  303 cgtgagttaactcacgcaggttataacccagcgtgagttaact 345  Q
    |||||||||| ||||||| |||||||| |||||||||||||||    
T  7172431 cgtgagttaattcacgcatgttataacacagcgtgagttaact 7172473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 346
Target Start/End: Original strand, 28717462 - 28717504
Alignment:
Q  304 gtgagttaactcacgcaggttataacccagcgtgagttaactc 346  Q
    ||||||||||||||||| || |||| |||||||||||||||||    
T  28717462 gtgagttaactcacgcatgtgataaaccagcgtgagttaactc 28717504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 345
Target Start/End: Complemental strand, 7148434 - 7148390
Alignment:
Q  302 gcgtgagttaactcacgcaggttataa-cccagcgtgagttaact 345  Q
    ||||||||||||||| | ||||||||| |||||||||||||||||    
T  7148434 gcgtgagttaactcatgtaggttataaccccagcgtgagttaact 7148390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 266 - 338
Target Start/End: Original strand, 36968422 - 36968494
Alignment:
Q  266 gtgacttaagtcacgctgtgcacatgacttaagtcggcgtgagttaactcacgcaggttataacccagcgtga 338  Q
    |||||||||||||  ||  |||||||||||||||| |||||||||||||||||||||||||||| || |||||    
T  36968422 gtgacttaagtcatactcggcacatgacttaagtcagcgtgagttaactcacgcaggttataacgcaacgtga 36968494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 27318609 - 27318655
Alignment:
Q  301 ggcgtgagttaactcacgcaggt-tataacccagcgtgagttaactc 346  Q
    ||||||| |||||||||||| || |||||||||||||||||||||||    
T  27318609 ggcgtgaattaactcacgcaagtgtataacccagcgtgagttaactc 27318655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 37828551 - 37828611
Alignment:
Q  286 cacatgacttaagtcggcgtgagttaactcacgcaggttataacccagcgtgagttaactc 346  Q
    |||||||||||| || |||||||||||||||| |||||||||||| |||||||||||||||    
T  37828551 cacatgacttaaatcagcgtgagttaactcacacaggttataacctagcgtgagttaactc 37828611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 213 - 318
Target Start/End: Complemental strand, 12765099 - 12764995
Alignment:
Q  213 aactggccaaaatacctccgcgtgagttaactcacacaggtgtataacccagtgtgacttaagtcacgctgtgcacatgacttaagtcggcgtgagttaa 312  Q
    ||||| ||||||||||   | ||||||||||||||| |||||||| ||| ||||||||||||||||||||  ||||||||||||| ||  | | ||||||    
T  12765099 aactgtccaaaatacccatgtgtgagttaactcacataggtgtattacc-agtgtgacttaagtcacgctcggcacatgacttaaatcaacttaagttaa 12765001  T
Q  313 ctcacg 318  Q
    ||||||    
T  12765000 ctcacg 12764995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 37828630 - 37828674
Alignment:
Q  302 gcgtgagttaactcacgcaggttataacccagcgtgagttaactc 346  Q
    ||||||||||||||| | |||||||||||||||||||||||||||    
T  37828630 gcgtgagttaactcatgtaggttataacccagcgtgagttaactc 37828674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 259
Target Start/End: Original strand, 37828476 - 37828535
Alignment:
Q  200 tcactctcatacaaactggccaaaatacctccgcgtgagttaactcacacaggtgtataa 259  Q
    |||||| ||||||||||| ||||||||||  ||||||||||||||||| ||||| |||||    
T  37828476 tcactcacatacaaactgaccaaaataccctcgcgtgagttaactcacgcaggtatataa 37828535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 4865603 - 4865562
Alignment:
Q  305 tgagttaactcacgcaggttataacccagcgtgagttaactc 346  Q
    |||||||||||| | |||||||||||||||||||||||||||    
T  4865603 tgagttaactcaagtaggttataacccagcgtgagttaactc 4865562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 346
Target Start/End: Original strand, 41104547 - 41104663
Alignment:
Q  231 cgcgtgagttaactcacacaggtgtataacccagtgtgacttaagtcacgctgtgcacatgacttaagtcggcgtgagttaactcacgcaggttataac- 329  Q
    ||||||||||||||||  |  || ||||| |||| |||| |||||||| | |  | | |||||||||||| ||||||||||||||| | ||||||||||     
T  41104547 cgcgtgagttaactcatgctagtatataatccagcgtgatttaagtcatgttcagtatatgacttaagtcagcgtgagttaactcatgtaggttataact 41104646  T
Q  330 ccagcgtgagttaactc 346  Q
     || |||||||||||||    
T  41104647 tcatcgtgagttaactc 41104663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 4865486 - 4865533
Alignment:
Q  200 tcactctcatacaaactggccaaaatacctccgcgtgagttaactcac 247  Q
    |||||||||||||||||  |||||||||| || |||||||||||||||    
T  4865486 tcactctcatacaaacttaccaaaatacccccacgtgagttaactcac 4865533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 5847629 - 5847676
Alignment:
Q  300 cggcgtgagttaactcacgcaggttat-aacccagcgtgagttaactc 346  Q
    |||| |||||||||||||||||||||| ||| ||||||||||||||||    
T  5847629 cggcatgagttaactcacgcaggttataaactcagcgtgagttaactc 5847676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 745741 - 745699
Alignment:
Q  305 tgagttaactcacgcaggttat-aacccagcgtgagttaactc 346  Q
    |||||||||||||||||||||| ||||||||| ||||||||||    
T  745741 tgagttaactcacgcaggttataaacccagcgcgagttaactc 745699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 317
Target Start/End: Original strand, 2387786 - 2387837
Alignment:
Q  266 gtgacttaagtcacgctgtgcacatgacttaagtcggcgtgagttaactcac 317  Q
    ||||||||||||||| | ||||||||||||||||| ||||||||||||||||    
T  2387786 gtgacttaagtcacgttttgcacatgacttaagtcagcgtgagttaactcac 2387837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 12828624 - 12828576
Alignment:
Q  200 tcactctcatacaaactggccaaaatacctc-cgcgtgagttaactcac 247  Q
    |||||||||||||||||| |||||||| ||| | |||||||||||||||    
T  12828624 tcactctcatacaaactgaccaaaatatctctcacgtgagttaactcac 12828576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 278
Target Start/End: Complemental strand, 26310425 - 26310345
Alignment:
Q  199 ctcactctcatacaaactggccaaaatacctc-cgcgtgagttaactcacacaggtgtataacccagtgtgacttaagtca 278  Q
    |||||| ||||||||||||   |||||| ||| ||| |||||||| ||||||||||||  ||||||  |||||||||||||    
T  26310425 ctcactttcatacaaactgataaaaatatctctcgcatgagttaattcacacaggtgttaaacccaacgtgacttaagtca 26310345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 53801576 - 53801528
Alignment:
Q  200 tcactctcatacaaactggccaaaatac-ctccgcgtgagttaactcac 247  Q
    ||||||||| |||||||| ||||||||| |||| |||||||||||||||    
T  53801576 tcactctcaaacaaactgaccaaaatactctccacgtgagttaactcac 53801528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 318
Target Start/End: Original strand, 34982129 - 34982213
Alignment:
Q  233 cgtgagttaactcacacaggtgtataacccagtgtgacttaagtcacgctgtgcacatgacttaagtcggcgtgagttaactcacg 318  Q
    |||||||||||||||  | |||||| ||| ||||||||||||||||||||  | ||||||||||||||  |||| |||||||||||    
T  34982129 cgtgagttaactcacgtatgtgtattacc-agtgtgacttaagtcacgctcggtacatgacttaagtcaacgtgggttaactcacg 34982213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 278
Target Start/End: Original strand, 16236266 - 16236325
Alignment:
Q  219 ccaaaatacctccgcgtgagttaactcacacaggtgtataacccagtgtgacttaagtca 278  Q
    ||||||||| |||| |||||||||||||| ||||| |||||||||| |||| ||||||||    
T  16236266 ccaaaatacatccgtgtgagttaactcacgcaggtatataacccagcgtgatttaagtca 16236325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 343
Target Start/End: Original strand, 16236281 - 16236321
Alignment:
Q  304 gtgagttaactcacgcaggt-tataacccagcgtgagttaa 343  Q
    |||||||||||||||||||| ||||||||||||||| ||||    
T  16236281 gtgagttaactcacgcaggtatataacccagcgtgatttaa 16236321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 5449638 - 5449594
Alignment:
Q  302 gcgtgagttaactcacgcaggttataacccagcgtgagttaactc 346  Q
    ||||||||||||||| | |||||||||||||||||||||||||||    
T  5449638 gcgtgagttaactcatgtaggttataacccagcgtgagttaactc 5449594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 5451198 - 5451154
Alignment:
Q  302 gcgtgagttaactcacgcaggttataacccagcgtgagttaactc 346  Q
    |||||||||||| || | |||||||||||||||||||||||||||    
T  5451198 gcgtgagttaacgcatgtaggttataacccagcgtgagttaactc 5451154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 285
Target Start/End: Original strand, 446252 - 446305
Alignment:
Q  232 gcgtgagttaactcacacaggtgtataacccagtgtgacttaagtcacgctgtg 285  Q
    |||||| ||||||||| || |||||||||||||||||| |||| ||||| ||||    
T  446252 gcgtgaattaactcacgcatgtgtataacccagtgtgagttaactcacgttgtg 446305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 1706724 - 1706765
Alignment:
Q  305 tgagttaactcacgcaggttataacccagcgtgagttaactc 346  Q
    |||||||||||||  ||||||||||||||||||| |||||||    
T  1706724 tgagttaactcactaaggttataacccagcgtgaattaactc 1706765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 346
Target Start/End: Original strand, 1860420 - 1860460
Alignment:
Q  307 agttaactcacgcaggttat-aacccagcgtgagttaactc 346  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  1860420 agttaactcacgcaggttataaacccagtgtgagttaactc 1860460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University