View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_high_68 (Length: 304)
Name: NF17063_high_68
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_high_68 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 288
Target Start/End: Complemental strand, 5536274 - 5536013
Alignment:
| Q |
7 |
agaacaaaaacagtgaagaagaggatgaagaagtttggtaaaaaagaggaagaagctgattttcagatccgaaaaatcgaatctagattcgaaaaaatcg |
106 |
Q |
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| T |
5536274 |
agaacaaaaacagtgaagaagaggatgaagaagtttggtaaaaaagaggaagaagctgattttcagatccgaa--------------------aaaatcg |
5536195 |
T |
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| Q |
107 |
aaccccagcctttgtttttatttaagaaaatgttaaaaactgttcaccattaacattaatataaaaggtgaactatgaaataataaatcagatttaacat |
206 |
Q |
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| T |
5536194 |
aaccccagcctttatttttatttaataaaatgttaaaaactgttcaccattaacattaatataaaaggtgaactatgaaataataaatcatatttaacat |
5536095 |
T |
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| Q |
207 |
cctcaactccttttgctctaaggttgcaaagagaggagagtttatgaatgcattttagagtagcaaccaagagagatttatc |
288 |
Q |
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| T |
5536094 |
cctcaactccgtttgctctaaggttgcaaacagaggagagtttatgcatgcattttagagtagcaaccaagagagatttatc |
5536013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 10459931 - 10459974
Alignment:
| Q |
5 |
caagaacaaaaacagtgaagaagaggatgaagaagtttggtaaa |
48 |
Q |
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| T |
10459931 |
caagaacaaaaacagtgaagaacaggatgaataagtttggtaaa |
10459974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 19737694 - 19737652
Alignment:
| Q |
5 |
caagaacaaaaacagtgaagaagaggatgaagaagtttggtaa |
47 |
Q |
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| T |
19737694 |
caagaacaaaaacagcgaagaacatgatgaagaagtttggtaa |
19737652 |
T |
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