View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_high_70 (Length: 299)
Name: NF17063_high_70
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_high_70 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 281
Target Start/End: Complemental strand, 47339081 - 47338811
Alignment:
| Q |
11 |
agaatatcctcatgacatcaagtgcttctgcttctggtcttccagcaataaaatctgacaggtctacttctttcaactggtccttgagggatatgagaat |
110 |
Q |
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| T |
47339081 |
agaatatcctcatgacatcaagtgcttctgcttctggtcttccagcaataaaatctgacaggtctacttctttcaactggtccttgagggatatgaaaat |
47338982 |
T |
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| Q |
111 |
cggcttagcgacttctgctgctcctaatccaaaacttatgttgctgaagcatattttagtgaaagaattacccggctccttcagtggactcaaaagttca |
210 |
Q |
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| T |
47338981 |
cggcttagcgacttctgctgctcctaatccaaaacttctgttgctgaagcatattttagtgaaagaattacccggctccttcagtggactcaaaagttct |
47338882 |
T |
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| Q |
211 |
tgagcctcctctgcttcaatgaaagccctttggcctttagatatatcaaaaacaaattcacgagggacagc |
281 |
Q |
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| T |
47338881 |
tgagcctcctctgcttcaatgaaagccctttggcctttagatatatcaaaaacagattcacgagggacagc |
47338811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 32061571 - 32061520
Alignment:
| Q |
34 |
gcttctgcttctggtcttccagcaataaaatctgacaggtctacttctttca |
85 |
Q |
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| T |
32061571 |
gcttctgcttctggtctcccagcaataaaatctgacagatctacctctttca |
32061520 |
T |
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