View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_high_77 (Length: 280)
Name: NF17063_high_77
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_high_77 |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 18312682 - 18312785
Alignment:
| Q |
1 |
actgcttgatttgagaaaaacttaaatcctaacacagtttgtgttttctcaatggcaaacagaattattatagtagatcatacataaacttgcggttcta |
100 |
Q |
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| T |
18312682 |
actgcttgatttgagaaaaacttaaatcctaacacaatttgtgttttctcaatggcaaacagaattattatagtagatcatacataaacttgcggttcta |
18312781 |
T |
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| Q |
101 |
aatt |
104 |
Q |
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|||| |
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| T |
18312782 |
aatt |
18312785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 66 - 229
Target Start/End: Original strand, 2783244 - 2783417
Alignment:
| Q |
66 |
tattatagtagatcatacataaacttgcggttctaaattggagattgccccacttgcattaatgatagtaattaaattgacac------------ttcta |
153 |
Q |
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| T |
2783244 |
tattatagtagaacata--taatcttgcggttctaaattgaagattgccccacttgcattaattatagtacttaaattgacaccatgtgttaaatttcta |
2783341 |
T |
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| Q |
154 |
tttgatgtgataataacatggcctccttacaatgattgaggattttgtctgatattagatattgccgaagtttata |
229 |
Q |
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| T |
2783342 |
tttgatgtgatgataacatggcctctttacactgattgaggattttgtctgatcttagatattgcctaagtttata |
2783417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 2783123 - 2783185
Alignment:
| Q |
1 |
actgcttgatttgagaaaaacttaaatcctaacacagtttgtgttttctcaatggcaaacaga |
63 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2783123 |
actgcttgatttgagaaaaagttaaatcctaacacagtttgtgttttctcaatgacaaacaga |
2783185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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