View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17063_high_78 (Length: 277)

Name: NF17063_high_78
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17063_high_78
NF17063_high_78
[»] chr1 (4 HSPs)
chr1 (18-273)||(30208188-30208443)
chr1 (187-249)||(30207890-30207952)
chr1 (222-273)||(26661567-26661618)
chr1 (222-272)||(41157054-41157104)
[»] chr8 (4 HSPs)
chr8 (186-273)||(11442915-11443002)
chr8 (182-273)||(40991815-40991905)
chr8 (182-273)||(30737624-30737714)
chr8 (222-272)||(5915930-5915980)
[»] chr2 (5 HSPs)
chr2 (177-273)||(2336686-2336781)
chr2 (185-274)||(2803175-2803263)
chr2 (196-262)||(39693927-39693990)
chr2 (222-272)||(28254282-28254332)
chr2 (226-272)||(36005929-36005975)
[»] chr4 (8 HSPs)
chr4 (182-273)||(29802603-29802693)
chr4 (182-256)||(53667335-53667408)
chr4 (183-249)||(30249789-30249854)
chr4 (222-272)||(36629300-36629350)
chr4 (198-255)||(31957580-31957636)
chr4 (193-249)||(2041167-2041222)
chr4 (198-274)||(10452335-10452410)
chr4 (198-230)||(45484831-45484863)
[»] chr3 (1 HSPs)
chr3 (186-274)||(50329342-50329429)
[»] chr5 (1 HSPs)
chr5 (222-273)||(32445947-32445998)
[»] chr7 (3 HSPs)
chr7 (222-273)||(4124133-4124184)
chr7 (222-272)||(37533056-37533105)
chr7 (200-260)||(3114464-3114523)
[»] chr6 (4 HSPs)
chr6 (222-272)||(3409322-3409372)
chr6 (222-272)||(10074036-10074086)
chr6 (222-272)||(10074408-10074458)
chr6 (217-262)||(2344980-2345025)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 30208443 - 30208188
Alignment:
Q  18 aagggcagggttgtgaaatgcacgaaatgcgaccggaagaaattttgcatactttgtattaaccgttggtacgtacaacttccttaacttatgttttatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30208443 aagggcagggttgtgaaatgcacgaaatgcgaccggaagaaattttgcatactttgtattaaccgttggtacgtacaacttccttaacttatgttttatt 30208344  T
Q  118 ctgtttaacgtgcttcctcagttgttggttatcttgtcttgtcttgggtaacgagggttgtgaccatccacattgggctcagagcaaccagacaagtgag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| | ||||||||    
T  30208343 ctgtttaacgtgcttcctcagttgttggttatcttgtcttgtcttgggtcacaagggttgtgaccatccacattgggctcagagcaacctggcaagtgag 30208244  T
Q  218 tttggacaccacactttaacccaaaaccttaatgcattgagtttaagggtcctctc 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30208243 tttggacaccacactttaacccaaaaccttaatgcattgagtttaagggtcctctc 30208188  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 30207952 - 30207890
Alignment:
Q  187 acattgggctcagagcaaccagacaagtgagtttggacaccacactttaacccaaaaccttaa 249  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||| ||||||||||||||||    
T  30207952 acattgggctcagagcaaccacacaggtgagtttggataccacactgtaacccaaaaccttaa 30207890  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 273
Target Start/End: Original strand, 26661567 - 26661618
Alignment:
Q  222 gacaccacactttaacccaaaaccttaatgcattgagtttaagggtcctctc 273  Q
    ||||||||||| | |||||||||||||| ||| |||||||| ||||||||||    
T  26661567 gacaccacactcttacccaaaaccttaaggcaatgagtttatgggtcctctc 26661618  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 41157104 - 41157054
Alignment:
Q  222 gacaccacactttaacccaaaaccttaatgcattgagtttaagggtcctct 272  Q
    ||||||||||| | |||||||||||||| ||| |||||||| |||||||||    
T  41157104 gacaccacactcttacccaaaaccttaaagcaatgagtttatgggtcctct 41157054  T

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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 186 - 273
Target Start/End: Complemental strand, 11443002 - 11442915
Alignment:
Q  186 cacattgggctcagagcaaccagacaagtgagtttggacaccacactttaacccaaaaccttaatgcattgagtttaagggtcctctc 273  Q
    ||||||||||| |||||||||| ||||||||| ||||||||||||  || |||||||||||||| |||||||||||| ||||||||||    
T  11443002 cacattgggctaagagcaaccacacaagtgagattggacaccacatattcacccaaaaccttaaggcattgagtttatgggtcctctc 11442915  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 273
Target Start/End: Complemental strand, 40991905 - 40991815
Alignment:
Q  182 catccacattgggctcagagcaaccagacaagtgagtttggacaccacactttaacccaaaaccttaatgcattgagtttaagggtcctctc 273  Q
    ||||||||||||||  |||||||||| ||| ||||||| ||||||||||  ||||||||||||||| | |||||| ||||| ||||||||||    
T  40991905 catccacattgggcctagagcaaccacacaggtgagtt-ggacaccacatcttaacccaaaaccttgaggcattgggtttatgggtcctctc 40991815  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 273
Target Start/End: Original strand, 30737624 - 30737714
Alignment:
Q  182 catccacattgggctcagagcaaccagacaagtgagtttggacaccacactttaacccaaaaccttaatgcattgagtttaagggtcctctc 273  Q
    |||| |||||||| | |||||||||| |||| |||||| ||||||| ||||||||||||||||||||   ||||| ||||| ||||||||||    
T  30737624 catctacattgggattagagcaaccatacaattgagtt-ggacaccgcactttaacccaaaaccttatgacattgggtttatgggtcctctc 30737714  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 5915980 - 5915930
Alignment:
Q  222 gacaccacactttaacccaaaaccttaatgcattgagtttaagggtcctct 272  Q
    ||||||||||| | |||||||||||||| ||| |||||||| |||||||||    
T  5915980 gacaccacactcttacccaaaaccttaaggcaatgagtttatgggtcctct 5915930  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 177 - 273
Target Start/End: Complemental strand, 2336781 - 2336686
Alignment:
Q  177 gtgaccatccacattgggctcagagcaaccagacaagtgagtttggacaccacactttaacccaaaaccttaatgcattgagtttaagggtcctctc 273  Q
    |||| |||| |||||||| |||||||||||| ||||||||||| ||||||||||  ||||||||||| ||||| ||||||| |||| ||||||||||    
T  2336781 gtgatcatcgacattgggttcagagcaaccacacaagtgagtt-ggacaccacatcttaacccaaaatcttaaggcattgaatttatgggtcctctc 2336686  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 274
Target Start/End: Original strand, 2803175 - 2803263
Alignment:
Q  185 ccacattgggctcagagcaaccagacaagtgagtttggacaccacactttaacccaaaaccttaatgcattgagtttaagggtcctctct 274  Q
    ||||||| ||| |||||| || ||||||||||| ||||||| |||||||| ||||||||| ||||  |||| |||||| ||||| |||||    
T  2803175 ccacatttggcccagagccacaagacaagtgag-ttggacatcacacttttacccaaaacgttaagacattaagtttatgggtcatctct 2803263  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 262
Target Start/End: Complemental strand, 39693990 - 39693927
Alignment:
Q  196 tcagagcaaccagacaagtgagtttggacaccacactttaacccaaaaccttaatgcattgagttta 262  Q
    ||||||||||||  |||||||||| ||||||||||  ||||||||||| ||||| ||||||||||||    
T  39693990 tcagagcaacca--caagtgagtt-ggacaccacatcttaacccaaaatcttaaggcattgagttta 39693927  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 28254282 - 28254332
Alignment:
Q  222 gacaccacactttaacccaaaaccttaatgcattgagtttaagggtcctct 272  Q
    ||||||||||| | |||||||||||||| ||| |||||||| |||||||||    
T  28254282 gacaccacactcttacccaaaaccttaaggcaatgagtttatgggtcctct 28254332  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 36005929 - 36005975
Alignment:
Q  226 ccacactttaacccaaaaccttaatgcattgagtttaagggtcctct 272  Q
    ||||||||| |||||||||||||| ||| |||||||| |||||||||    
T  36005929 ccacacttttacccaaaaccttaaggcaatgagtttatgggtcctct 36005975  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 273
Target Start/End: Complemental strand, 29802693 - 29802603
Alignment:
Q  182 catccacattgggctcagagcaaccagacaagtgagtttggacaccacactttaacccaaaaccttaatgcattgagtttaagggtcctctc 273  Q
    ||||||||||||||  |||||||||| ||||||||||| |||||||| |  ||||| ||||||||||| |||||| ||||| ||||||||||    
T  29802693 catccacattgggccaagagcaaccacacaagtgagtt-ggacaccatatcttaacacaaaaccttaaggcattgggtttatgggtcctctc 29802603  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 256
Target Start/End: Original strand, 53667335 - 53667408
Alignment:
Q  182 catccacattgggctcagagcaaccagacaagtgagtttggacaccacactttaacccaaaaccttaatgcattg 256  Q
    |||||||||||||||||||||||| |  |||||||||| | ||||||||||| |||| |||||||||||||||||    
T  53667335 catccacattgggctcagagcaacaacgcaagtgagttag-acaccacacttcaacctaaaaccttaatgcattg 53667408  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 30249854 - 30249789
Alignment:
Q  183 atccacattgggctcagagcaaccagacaagtgagtttggacaccacactttaacccaaaaccttaa 249  Q
    ||||||||| | || |||||||||| |||||||| |||||||| ||| |||||||||||||||||||    
T  30249854 atccacattagactaagagcaaccacacaagtga-tttggacatcactctttaacccaaaaccttaa 30249789  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 36629350 - 36629300
Alignment:
Q  222 gacaccacactttaacccaaaaccttaatgcattgagtttaagggtcctct 272  Q
    ||||||||||| | |||||||||||||| ||| |||||||| |||||||||    
T  36629350 gacaccacactcttacccaaaaccttaaggcaatgagtttatgggtcctct 36629300  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 31957636 - 31957580
Alignment:
Q  198 agagcaaccagacaagtgagtttggacaccacactttaacccaaaaccttaatgcatt 255  Q
    ||||||||||  |||||||||| ||||||||||  ||||||||||||||||| |||||    
T  31957636 agagcaaccacgcaagtgagtt-ggacaccacatcttaacccaaaaccttaaggcatt 31957580  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 2041222 - 2041167
Alignment:
Q  193 ggctcagagcaaccagacaagtgagtttggacaccacactttaacccaaaaccttaa 249  Q
    |||| |||||||||| ||||||||||| ||||||||||  || ||||||||||||||    
T  2041222 ggctaagagcaaccacacaagtgagtt-ggacaccacatcttcacccaaaaccttaa 2041167  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 274
Target Start/End: Original strand, 10452335 - 10452410
Alignment:
Q  198 agagcaaccagacaagtgagtttggacaccacactttaacccaaaaccttaatgcattgagtttaagggtcctctct 274  Q
    |||||||||| ||||||||||| | |||||||| ||||||  ||||| |||| ||||  |||||| |||||||||||    
T  10452335 agagcaaccatacaagtgagtt-gaacaccacattttaactaaaaactttaaggcatgaagtttatgggtcctctct 10452410  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 45484863 - 45484831
Alignment:
Q  198 agagcaaccagacaagtgagtttggacaccaca 230  Q
    |||||||||||||| ||||||||||||||||||    
T  45484863 agagcaaccagacaggtgagtttggacaccaca 45484831  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 274
Target Start/End: Original strand, 50329342 - 50329429
Alignment:
Q  186 cacattgggctcagagcaaccagacaagtgagtttggacaccacactttaacccaaaaccttaatgcattgagtttaagggtcctctct 274  Q
    |||||||| || |||||||||| ||||||||||||| |||||||   ||||||||||||||||| ||||||  |||| |||||||||||    
T  50329342 cacattggtctaagagcaaccaaacaagtgagtttg-acaccacgtcttaacccaaaaccttaaggcattggatttatgggtcctctct 50329429  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 222 - 273
Target Start/End: Complemental strand, 32445998 - 32445947
Alignment:
Q  222 gacaccacactttaacccaaaaccttaatgcattgagtttaagggtcctctc 273  Q
    |||||||||||||||||||||||||||| || ||| ||||| ||||||||||    
T  32445998 gacaccacactttaacccaaaaccttaaggcgttgggtttatgggtcctctc 32445947  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 273
Target Start/End: Original strand, 4124133 - 4124184
Alignment:
Q  222 gacaccacactttaacccaaaaccttaatgcattgagtttaagggtcctctc 273  Q
    ||||||||||||| | |||||||||||||||| ||||||||  |||||||||    
T  4124133 gacaccacacttttatccaaaaccttaatgcaatgagtttattggtcctctc 4124184  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 37533056 - 37533105
Alignment:
Q  222 gacaccacactttaacccaaaaccttaatgcattgagtttaagggtcctct 272  Q
    |||||||||||||| ||||||||||||| ||| |||||||| |||||||||    
T  37533056 gacaccacacttta-cccaaaaccttaaggcaatgagtttatgggtcctct 37533105  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 3114464 - 3114523
Alignment:
Q  200 agcaaccagacaagtgagtttggacaccacactttaacccaaaaccttaatgcattgagtt 260  Q
    |||||||| ||||||||||| |||||||||||||||| ||||||  |||| ||||| ||||    
T  3114464 agcaaccatacaagtgagtt-ggacaccacactttaatccaaaatattaaagcatttagtt 3114523  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 3409372 - 3409322
Alignment:
Q  222 gacaccacactttaacccaaaaccttaatgcattgagtttaagggtcctct 272  Q
    ||||||||||| | |||||||||||||| ||| |||||||| |||||||||    
T  3409372 gacaccacactcttacccaaaaccttaaggcaatgagtttatgggtcctct 3409322  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 10074036 - 10074086
Alignment:
Q  222 gacaccacactttaacccaaaaccttaatgcattgagtttaagggtcctct 272  Q
    ||||||||||||| |||||||||||||| ||| || ||||| |||||||||    
T  10074036 gacaccacacttttacccaaaaccttaaggcaatgggtttatgggtcctct 10074086  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 10074408 - 10074458
Alignment:
Q  222 gacaccacactttaacccaaaaccttaatgcattgagtttaagggtcctct 272  Q
    ||||||||||| | |||||||||||||| ||| |||||||| |||||||||    
T  10074408 gacaccacactcttacccaaaaccttaaggcaatgagtttatgggtcctct 10074458  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 2345025 - 2344980
Alignment:
Q  217 gtttggacaccacactttaacccaaaaccttaatgcattgagttta 262  Q
    |||||||||| ||||||||| ||||||| |||| ||||||||||||    
T  2345025 gtttggacacaacactttaatccaaaactttaaagcattgagttta 2344980  T

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