View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_high_79 (Length: 275)
Name: NF17063_high_79
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_high_79 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 24993167 - 24993421
Alignment:
| Q |
17 |
acatattgttttttgtaggattgtggagagtgtaggggaaggagtgaaagacttaaacgaaaatgacaaagtggtgatagtattcaacggggagtgtggt |
116 |
Q |
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| T |
24993167 |
acatattgttttttgtaggattgtggagagtgtaggggaaggagtgaaagacttaaacgaaaatgacaaagtggtgatagtattcaacggggagtgtggt |
24993266 |
T |
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| Q |
117 |
gagtgtaattactgcaagtgtgagaaaaccaacatgtgtgagaaatatggtgtaaacccaatgaagagactaatgtgtgatggtacaagtagattctcta |
216 |
Q |
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| T |
24993267 |
gagtgtaactactgcaagtgtgagaaaaccaacatgtgtgagaagtatggtgtaaacccaatgaagagactaatgtgtgatggtacaagtagattctcta |
24993366 |
T |
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| Q |
217 |
caatagatggcaaactcatttaccatttcttgaactcttcaactttcactgagta |
271 |
Q |
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| T |
24993367 |
caatagatggcaaactcatttaccatttcttgaactcttcaactttcacggagta |
24993421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 25 - 275
Target Start/End: Original strand, 24985256 - 24985506
Alignment:
| Q |
25 |
ttttttgtaggattgtggagagtgtaggggaaggagtgaaagacttaaacgaaaatgacaaagtggtgatagtattcaacggggagtgtggtgagtgtaa |
124 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||| | || |||||||||||||||||| || ||||||| || ||||||||||||||||| |
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| T |
24985256 |
ttttttgtaggattgtggaaagtgtaggggaaggagtgaatgacatgaaagaaaatgacaaagtggtgctaatattcaatggtgagtgtggtgagtgtaa |
24985355 |
T |
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| Q |
125 |
ttactgcaagtgtgagaaaaccaacatgtgtgagaaatatggtgtaaacccaatgaagagactaatgtgtgatggtacaagtagattctctacaatagat |
224 |
Q |
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| T |
24985356 |
gtgctgcatgtgcaagaaaaccaacatgtgtgagaaatctggagtagacccaatgaagaagttaatgtgtgatggaacaagtagattttcttcaatagat |
24985455 |
T |
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| Q |
225 |
ggcaaactcatttaccatttcttgaactcttcaactttcactgagtataca |
275 |
Q |
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| T |
24985456 |
ggcaaacccatttttcatttcttgaatacttcaactttcactgagtataca |
24985506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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