View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_high_88 (Length: 252)
Name: NF17063_high_88
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_high_88 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 252
Target Start/End: Complemental strand, 33159372 - 33159129
Alignment:
| Q |
7 |
tccaagaaaatcaactcaatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttat |
106 |
Q |
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| T |
33159372 |
tccaagcaaatcaactcaatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttat |
33159273 |
T |
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| Q |
107 |
ctttacctccacaaatgatgacaatgtcatcctccctcttcatttttcaaaggaaatttattagtcacgnnnnnnnnnnnnctttctcaatttaaacttg |
206 |
Q |
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| T |
33159272 |
ctttacctccacaaatgatgacaatgtcatcctccctcttcatttttcaaaggaaatttattagtcacg--ttttttttttctttctcaatttaaacttg |
33159175 |
T |
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| Q |
207 |
tcaacaatgaagagaatggacaatatattaaacttctagaaataat |
252 |
Q |
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| T |
33159174 |
tcaacaataaagagaatggacaatatattaaacttctagaaataat |
33159129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 252
Target Start/End: Complemental strand, 33182216 - 33181972
Alignment:
| Q |
7 |
tccaagaaaatcaactcaatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttat |
106 |
Q |
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| T |
33182216 |
tccaagcaaatcaactcaatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttat |
33182117 |
T |
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| Q |
107 |
ctttacctccacaaatgatgacaatgtcatcctccctcttcatttttcaaaggaaatttattagtcacgnnnnnnnnnnnnctttctcaatttaaacttg |
206 |
Q |
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| T |
33182116 |
ctttacctccacaaatgatgacaatgtcatcctccctcttcatttttcaaaggaaatttattagtcacg-tttttttttttctttctcaatttaaacttg |
33182018 |
T |
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| Q |
207 |
tcaacaatgaagagaatggacaatatattaaacttctagaaataat |
252 |
Q |
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| T |
33182017 |
tcaacaataaagagaatggacagtatattaaacttctagaaataat |
33181972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 33140737 - 33140630
Alignment:
| Q |
22 |
tcaatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttatctttacctccacaaa |
121 |
Q |
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| T |
33140737 |
tcaattgaagtcttcgtctgcttaatagcggcatcatttgctagagcaccagcatacttagtgaactgttgaatccattccttatctttacctccataaa |
33140638 |
T |
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| Q |
122 |
tgatgaca |
129 |
Q |
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| T |
33140637 |
tgatgaca |
33140630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 33287371 - 33287514
Alignment:
| Q |
18 |
caactcaatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttatctttacctcca |
117 |
Q |
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||||||||| ||||| |||| |||||||||| | | ||||||| | |||||| | | |||| ||||||| ||| |||||| ||||||||||||||||| |
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| T |
33287371 |
caactcaattgaagtctttgcctgcttaatatttgtatcatttgctagggcagtagcaaacttggtgaattcttggatccatgccttatctttacctcca |
33287470 |
T |
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| Q |
118 |
caaatgatgacaatgtcatcctccctcttcatttttcaaaggaa |
161 |
Q |
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| T |
33287471 |
taaatgataacaaacttctcctcctccttcatttttcaaaggaa |
33287514 |
T |
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