View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_high_89 (Length: 250)
Name: NF17063_high_89
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_high_89 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 2657866 - 2657629
Alignment:
| Q |
1 |
tactccatcttattaaagttgataaggaataggagcgaaaatttccctctcatataaggataaattgttgaatgcagggtgaagggcttaaaatatgaca |
100 |
Q |
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| T |
2657866 |
tactccatcttattaaagttgataaggaataggagcgaaaatttccctctcatataaggataaattgttgaatgcagggtgaagggcttaaaatatgaca |
2657767 |
T |
|
| Q |
101 |
tcttacgtttttgttaatagaaaacgaagttcacggcttaaatattttgtattgaactatcatagttatcttattctaatcaatgaattacgtgcactgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2657766 |
tcttacgtttttgttaatagaaaacgaagttcacggcttaaatattttgtattgaactatcatagttatcttattctaatcaatgaattacgtgcactgc |
2657667 |
T |
|
| Q |
201 |
agattgccaatgaatcaaaagatgacgattttactctc |
238 |
Q |
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| T |
2657666 |
agattgccaatgaatcaaaagatgacgattttactctc |
2657629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 188
Target Start/End: Complemental strand, 28804546 - 28804413
Alignment:
| Q |
55 |
taaggataaattgttgaatgcagggtgaagggcttaaaatatgacatcttacgtttttgttaatagaaaacgaagttcacggcttaaatattttgtattg |
154 |
Q |
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| T |
28804546 |
taaggataaattgcagaatgcagggtatgtgttttaaaatatggcatcttacgtttttattaacataaaaggtagtttatggcttaaacattttgtattt |
28804447 |
T |
|
| Q |
155 |
aactatcatagttatcttattctaatcaatgaat |
188 |
Q |
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| T |
28804446 |
aactatgataattatcatattataatcaatgaat |
28804413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 55 - 190
Target Start/End: Complemental strand, 3698445 - 3698310
Alignment:
| Q |
55 |
taaggataaattgttgaatgcagggtgaagggcttaaaatatgacatcttacgtttttgttaatagaaaacgaagttcacggcttaaatattttgtattg |
154 |
Q |
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||||||||||| | |||||||| | | |||||||||||| ||||||||| |||||||||| | |||| |||||||||||||||| ||||||||||| |
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| T |
3698445 |
taaggataaatcgctgaatgcaagatagtgggcttaaaatacgacatcttatatttttgttaacaaaaaaggaagttcacggcttaacgattttgtattg |
3698346 |
T |
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| Q |
155 |
aactatcatagttatcttattctaatcaatgaatta |
190 |
Q |
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| T |
3698345 |
aactatcatagttatcttattctaattaatgaatta |
3698310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 3705209 - 3705148
Alignment:
| Q |
55 |
taaggataaattgttgaatgcagggtgaagggcttaaaatatgacatcttacgtttttgtta |
116 |
Q |
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|||||| |||| | |||||||||||| ||| ||||||||||||||||||| ||||||||| |
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| T |
3705209 |
taaggacaaatcgctgaatgcagggtagaggtcttaaaatatgacatcttatatttttgtta |
3705148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 8331735 - 8331787
Alignment:
| Q |
138 |
ttaaatattttgtattgaactatcatagttatcttattctaatcaatgaatta |
190 |
Q |
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|||||||||||||||||||||||||||||||| || || |||||||||||||| |
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| T |
8331735 |
ttaaatattttgtattgaactatcatagttattttgttgtaatcaatgaatta |
8331787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 28326151 - 28326179
Alignment:
| Q |
154 |
gaactatcatagttatcttattctaatca |
182 |
Q |
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| T |
28326151 |
gaactatcatagttatcttattctaatca |
28326179 |
T |
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