View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_high_9 (Length: 647)
Name: NF17063_high_9
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-138; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 9 - 288
Target Start/End: Original strand, 40788627 - 40788908
Alignment:
| Q |
9 |
gagtgagaagaaaatcaaacaggaaaaagaaacgatgatgactgtctggaaaggaatgtgtgcgagcgaacgtgtctggattggaacaactaaatgacat |
108 |
Q |
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| T |
40788627 |
gagtgaaaagaaaatcaaacaggaaaaagaaacgatgatgactgtctggaaaagaatgtgtgcgagcgaacgtgtctggattggaacaactaaatgacat |
40788726 |
T |
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| Q |
109 |
tactgcccttatccgatacgcgtttctcgcaactaaaaaacgtt-gtttacgatgtcgtttctgggacacgtaaggaatttcaaactttaccattttcgg |
207 |
Q |
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| T |
40788727 |
tactgcccttatccgatacgcgtttctcgcaactagaaaacgttattttacgatgtcgtttctgggacacgtaaggaatttcaaactttaccattttcgg |
40788826 |
T |
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| Q |
208 |
tgtgtacgtaaaaagtcatat-gttgttttagtaaacaaacagagtcatgaatctaaggatgttgtcgcacggttacaactc |
288 |
Q |
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| T |
40788827 |
tgtgtacgtaaaaagtcatatggttgttttagtaaacaaacagagtcatgaatctaaggatgttgtcgcacggttacaactc |
40788908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 366 - 551
Target Start/End: Original strand, 40788982 - 40789178
Alignment:
| Q |
366 |
ggcaggtttacttcttgggttttattcccggttcagatgacatgttgctatatgagctttctgttatctatca-----------tgacaaaagatttggt |
454 |
Q |
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| T |
40788982 |
ggcaggtttacttcttgggttttattcacggttcagatgacatgttgctatatgagctttctgttatctatcatgagctgatcatgacaaaagatttggt |
40789081 |
T |
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| Q |
455 |
ttatacataatttgtttgctattctaattctcttgcttgcatcaactttattagtggccccattgagaagtatcatatcatatatatgttgttctca |
551 |
Q |
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| T |
40789082 |
ttatccagaatttgtttgctattctgattctcttgcttgcatcaactttattaatggccccattgagaggtatcgtatcatatatatgttattctca |
40789178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 542 - 632
Target Start/End: Original strand, 40789319 - 40789409
Alignment:
| Q |
542 |
gttgttctcatatgagacataaaacaatttcttcaacaaaccaatctaatggtttctcgcactcttagagaggaaaatcattgtgcagact |
632 |
Q |
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| T |
40789319 |
gttgttctcatatgagacatgaaacaatttcttcaacaaaccaatctaacggtttctcgcactcttagagaggggaaccattgtgcagact |
40789409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 470 - 628
Target Start/End: Complemental strand, 5204102 - 5203949
Alignment:
| Q |
470 |
ttgctattctaattctcttgcttgcatcaactttattagtggccccattgagaagtatcatatcatatatatgttgttctcatatgagacataaaacaat |
569 |
Q |
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| T |
5204102 |
ttgctattctgattctcttgcttgcatcaaccttatatatggccccattgagaggttccatatc-----tatgctgttatcatacaagacataaaacaaa |
5204008 |
T |
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| Q |
570 |
ttcttcaacaaaccaatctaatggtttctcgcactcttagagaggaaaatcattgtgca |
628 |
Q |
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| T |
5204007 |
tgcttcaacaaatcaatgtaacggtttctcacactcttagagaggggaatcaatgtgca |
5203949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 435 - 632
Target Start/End: Complemental strand, 10470278 - 10470086
Alignment:
| Q |
435 |
atcatgacaaaagatttggtttatacataatttgtttgctattctaattctcttgcttgcatcaactttattagtggccccattgagaagtatcatatca |
534 |
Q |
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| T |
10470278 |
atcatggctaaagatttgagttatgcaaaacttgcttgctattctgattctcttgcttgcgtcaaccttattaatggtcccatcgtgagataccatatc- |
10470180 |
T |
|
| Q |
535 |
tatatatgttgttctcatatgagacataaaacaatttcttcaacaaaccaatctaatggtttctcgcactcttagagaggaaaatcattgtgcagact |
632 |
Q |
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| T |
10470179 |
----tatgtggttctcatccaagagataaaacaaatgcttcaacaaaccaatccaacggtttctcacactcttagagaggggaaccattgtgcagact |
10470086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 530 - 632
Target Start/End: Original strand, 38224605 - 38224707
Alignment:
| Q |
530 |
tatcatatatatgttgttctcatatgagacataaaacaatttcttcaacaaaccaatctaatggtttctcgcactcttagagaggaaaatcattgtgcag |
629 |
Q |
| |
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| T |
38224605 |
tatcacatctatgttgttctcatcaaagacataaagcaattgcttcaccataccagcgtaacggtttctcacactcttagagagaaaaatcagtgtgcag |
38224704 |
T |
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| Q |
630 |
act |
632 |
Q |
| |
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||| |
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| T |
38224705 |
act |
38224707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 533 - 632
Target Start/End: Complemental strand, 51303074 - 51302974
Alignment:
| Q |
533 |
catatatatgttgttctcatatgagacataaaacaatttcttcaacaaaccaatctaatggtttctcgcactctt-agagaggaaaatcattgtgcagac |
631 |
Q |
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||||| ||||||||| ||||| ||||||||||||| | ||||| ||| |||| ||| |||||||| ||||||| |||||||| ||||| ||||||||| |
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| T |
51303074 |
catatttatgttgttatcatacaagacataaaacaaatgcttcatcaactcaatgtaacggtttctcacactcttaagagaggagaatcaatgtgcagac |
51302975 |
T |
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| Q |
632 |
t |
632 |
Q |
| |
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| T |
51302974 |
t |
51302974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 522
Target Start/End: Complemental strand, 10484169 - 10484117
Alignment:
| Q |
470 |
ttgctattctaattctcttgcttgcatcaactttattagtggccccattgaga |
522 |
Q |
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| T |
10484169 |
ttgctattctgattctcttgcttgtatcaaccttattaatggtcccattgaga |
10484117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 435 - 613
Target Start/End: Complemental strand, 35061105 - 35060932
Alignment:
| Q |
435 |
atcatgacaaaagatttggtttatacataatttgtttgctattctaattctcttgcttgcatcaactttattagtggccccattgagaagtatcatatca |
534 |
Q |
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|||||| |||||||||||| |||| ||||| ||| |||||||||| |||||||||||||||||||| |||||| ||| |||||||| | ||| |||||| |
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| T |
35061105 |
atcatggcaaaagatttgggttatgcataacttgcttgctattctgattctcttgcttgcatcaaccttattaatggtcccattgaaaggtaccatatc- |
35061007 |
T |
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| Q |
535 |
tatatatgttgttctcatatgagacataaaacaatttcttcaacaaaccaatctaatggtttctcgcactcttagagag |
613 |
Q |
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| T |
35061006 |
----tacattgttctcatccaagacataaaacaaatgcttcaacaaaccaatgtaacagtttctcacactcttagagag |
35060932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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