View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_high_90 (Length: 249)
Name: NF17063_high_90
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_high_90 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 39130961 - 39130720
Alignment:
| Q |
8 |
cgaagaatattgttatcatcaaaaaacaacttatagaagccagaagaatgattactctgacttcttgaggaaacaagttctgtgtatctagtgagaggtt |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
39130961 |
cgaataatattgttatcatcaaaaaacaacttatagaagccagaagaatgattactctgacttcttgaggaaccaagttttgtgtatctagtgagaggtt |
39130862 |
T |
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| Q |
108 |
gattaggaaggagagtatttgttggaaaatcatagctttgccacaagatcgtagtaccttgaagctcacgtaacacaagattgccatcttcttttagata |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39130861 |
gattaggaaggagagtatttgttggaaaatcatagctttgccacaagatcgtagtaccttgaagctcacgtaacacaagattgccatcttcttttagata |
39130762 |
T |
|
| Q |
208 |
caactctagtggagtgtttgattctgtgtttgaagaccaaat |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
39130761 |
caactctagtggagtgtttgattctgtgtttgaagaccaaat |
39130720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 18659945 - 18660176
Alignment:
| Q |
16 |
attgttatcatcaaaaaacaacttatagaagccagaagaatgattactctgacttcttgaggaaacaagttctgtgtatctagtgagaggttgattagga |
115 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||| || ||| |||| |||||||||| | |||||||||||||||||||||||||| |
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| T |
18659945 |
attgttatcatcaaagaaaaacttatagaagccagaagaatgattactttggctttttgaagaaacaagttttatgtatctagtgagaggttgattagga |
18660044 |
T |
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| Q |
116 |
aggagagtatttgttggaaaatcatagctttgccacaagatcgtagtaccttgaagctcacgtaacacaagattgccatcttcttttagatacaactcta |
215 |
Q |
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| T |
18660045 |
aggagagtatttgttgggaaatcatagctttgccacaagatggtagttccttgaagctcacgtaatacaagattaccatcttctttgagatacaactcta |
18660144 |
T |
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| Q |
216 |
gtggagtgtttgattctgtgtttgaagaccaa |
247 |
Q |
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| T |
18660145 |
atgaagcatttgatgctgtgtttgaagaccaa |
18660176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 14 - 247
Target Start/End: Original strand, 21131781 - 21132014
Alignment:
| Q |
14 |
atattgttatcatcaaaaaacaacttatagaagccagaagaatgattactctgacttcttgaggaaacaagttctgtgtatctagtgagaggttgattag |
113 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||| |||||||||| |
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| T |
21131781 |
atattgttatcatcaaagaaacacttatagaagccagaagaatgattactctggcttcttgaagaaacaagttttgtgtatctagtgagtggttgattag |
21131880 |
T |
|
| Q |
114 |
gaaggagagtatttgttggaaaatcatagctttgccacaagatcgtagtaccttgaagctcacgtaacacaagattgccatcttcttttagatacaactc |
213 |
Q |
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||||||||||||| ||||| |||||||||||||||||||| || ||| | |||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
21131881 |
gaaggagagtattggttgggaaatcatagctttgccacaaaatggtacttccttgaagctcacgtaacacaagattaccatcttctttgagatacaactc |
21131980 |
T |
|
| Q |
214 |
tagtggagtgtttgattctgtgtttgaagaccaa |
247 |
Q |
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|| |||| | |||| | ||||||||||||||| |
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| T |
21131981 |
taacggagcatctgatgccgtgtttgaagaccaa |
21132014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 21112823 - 21113054
Alignment:
| Q |
16 |
attgttatcatcaaaaaacaacttatagaagccagaagaatgattactctgacttcttgaggaaacaagttctgtgtatctagtgagaggttgattagga |
115 |
Q |
| |
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||||||||||||||| ||||||||||| |||||||||||||||||||| || |||||||| |||||||| | ||| |||||||||||||||||||||||| |
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| T |
21112823 |
attgttatcatcaaagaacaacttataaaagccagaagaatgattactatggcttcttgaagaaacaaggtttgtatatctagtgagaggttgattagga |
21112922 |
T |
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| Q |
116 |
aggagagtatttgttggaaaatcatagctttgccacaagatcgtagtaccttgaagctcacgtaacacaagattgccatcttcttttagatacaactcta |
215 |
Q |
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|||||||||||||| || ||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||| | ||||||||||||| |
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| T |
21112923 |
aggagagtatttgtcgggaaatcatagctttgccacaagatggtaggtccttgaagctcacgtaacacaagattcccatcttctctaagatacaactcta |
21113022 |
T |
|
| Q |
216 |
gtggagtgtttgattctgtgtttgaagaccaa |
247 |
Q |
| |
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||||| | |||| | ||||||||||||||| |
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| T |
21113023 |
atggagcatctgatgccgtgtttgaagaccaa |
21113054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 21124217 - 21124442
Alignment:
| Q |
16 |
attgttatcatcaaaaaacaacttatagaagccagaagaatgattactctgacttcttgaggaaacaagttctgtgtat---ctagtgagaggttgatta |
112 |
Q |
| |
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||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||| |||| ||||| ||||||| |||||||||||||||||| |
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| T |
21124217 |
attgttatcatcaaagaaacacttatagaagccagaagaatgattactctggcttcttgaagaaataagttttgtgtattatctagtgagaggttgatta |
21124316 |
T |
|
| Q |
113 |
ggaaggagagtatttgttggaaaatcatagctttgccacaagatcgtagtaccttgaagctcacgtaacacaagattgccatcttcttttagatacaact |
212 |
Q |
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|||||||||| ||||||||| ||||||||||||| || ||| || ||||| | |||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
21124317 |
ggaaggagagaatttgttgggaaatcatagctttcccccaaaatggtagttctttgaagctcacgtaacacaagattaccatcttctttgagatacaact |
21124416 |
T |
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| Q |
213 |
ctagtggagtgtttgattctgtgttt |
238 |
Q |
| |
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||| ||||| | |||| |||||||| |
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| T |
21124417 |
ctaatggagcatctgatgctgtgttt |
21124442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 245
Target Start/End: Complemental strand, 21107042 - 21106819
Alignment:
| Q |
22 |
atcatcaaaaaacaacttatagaagccagaagaatgattactctgacttcttgaggaaacaagttctgtgtatctagtgagaggttgattaggaaggaga |
121 |
Q |
| |
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||||||||| | ||||| |||||||||| |||||||||||||| ||||||||| | ||||| | ||| ||||| || ||||||||| ||||||||| |
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| T |
21107042 |
atcatcaaagtagaacttgtagaagccagtagaatgattactctcacttcttgaagctacaagctttgtatatcttgtaagaggttgacctggaaggaga |
21106943 |
T |
|
| Q |
122 |
gtatttgttggaaaatcatagctttgccacaagatcgtagtaccttgaagctcacgtaacacaagattgccatcttcttttagatacaactctagtggag |
221 |
Q |
| |
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|||| ||||||| | ||| | || |||||||| || || | |||||||||||||| ||||||||||| ||||| ||||| |||| |||||||||||| |
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| T |
21106942 |
gtatctgttggagagtcaaaactctgccacaaaattgtgattccttgaagctcacgcaacacaagatttccatcatctttgagatgcaactctagtggtt |
21106843 |
T |
|
| Q |
222 |
tgtttgattctgtgtttgaagacc |
245 |
Q |
| |
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| |||| ||||||||||||||| |
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| T |
21106842 |
tcaatgatgctgtgtttgaagacc |
21106819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 248
Target Start/End: Complemental strand, 21097423 - 21097197
Alignment:
| Q |
22 |
atcatcaaaaaacaacttatagaagccagaagaatgattactctgacttcttgaggaaacaagttctgtgtatctagtgagaggttgattaggaaggaga |
121 |
Q |
| |
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||||||||| || ||| ||||||||||||||||||||||||||| |||| |||| || ||||| | ||| ||||| || ||||||||| ||||||||| |
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| T |
21097423 |
atcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttgtaagaggttgacctggaaggaga |
21097324 |
T |
|
| Q |
122 |
gtatttgttggaaaatcatagctttgccacaagatcgtagtaccttgaagctcacgtaacacaagattgccatcttcttttagatacaactctagtggag |
221 |
Q |
| |
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|||| ||||||| | ||| | || |||||||| || | | |||||||||||||| ||||||||||| ||||| | ||| |||| ||| |||| ||| |
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| T |
21097323 |
gtatctgttggagagtcaaaactctgccacaaaatgttgattccttgaagctcacgcaacacaagatttccatcatttttgagatgcaattctaatggtt |
21097224 |
T |
|
| Q |
222 |
tgtttgattctgtgtttgaagaccaaa |
248 |
Q |
| |
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| |||| | |||||||||||||||| |
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| T |
21097223 |
tcaatgatgcagtgtttgaagaccaaa |
21097197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 153
Target Start/End: Complemental strand, 26693308 - 26693261
Alignment:
| Q |
106 |
ttgattaggaaggagagtatttgttggaaaatcatagctttgccacaa |
153 |
Q |
| |
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||||| ||||||||| |||| ||||||||||||| ||||||||||||| |
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| T |
26693308 |
ttgatcaggaaggagggtatctgttggaaaatcaaagctttgccacaa |
26693261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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