View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_high_96 (Length: 244)
Name: NF17063_high_96
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_high_96 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 40 - 244
Target Start/End: Complemental strand, 756807 - 756603
Alignment:
| Q |
40 |
tatatatacacacacccttgtttaacctatattgaagtgaatctcacaacctttttatcacattcttcatacatcagtcaatcttgcatgtgatgttagt |
139 |
Q |
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| T |
756807 |
tatatatacacacacccttatttaacctatatagaagtgaatctcacaacctttttatcacattcttcatacatcagtcaatcttgcatgtgatgttagt |
756708 |
T |
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| Q |
140 |
agatgtgggattaggttaggataagttatgctctacaaggccaaaacttgatatgtcaaaaacttaaaggcctcagagtgatatgtggcttgtcatagac |
239 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
756707 |
agatgtgggattaggttagtataagttatgctctacaaggccaaaacttgatatgtcaaaaacttaaaggcctaagagtgatatgtggcttctcatagac |
756608 |
T |
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| Q |
240 |
ttgtt |
244 |
Q |
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||||| |
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| T |
756607 |
ttgtt |
756603 |
T |
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