View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17063_high_97 (Length: 243)
Name: NF17063_high_97
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_high_97 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 31406533 - 31406740
Alignment:
| Q |
1 |
cagcagaatcagcagcagctaggacaagctcagggtgaatatttcttgcatgatccacaacatttggaagtcccagtgctctcaaggccaaatgagctgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31406533 |
cagcagaatcagcagcagctaggacaagctcagggtgaatatttcctgcatgatccacagcatttggaagtcccagtgctctcaaggccaaatgagctgc |
31406632 |
T |
|
| Q |
101 |
cttctgtcctgaaatcatcattgctccaaatgttggaccctgcaatttcaacaccaaaacagttaataatggccaattgatatatgaaaacaaggtattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31406633 |
cttctgtcctgaaatcatcattgctccaaatgttggaccctgcaatttcaacaccaaaacagttaataatggccaatt-atatatgaaaacaaggtattt |
31406731 |
T |
|
| Q |
201 |
caacttcta |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
31406732 |
caacttcta |
31406740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 47480594 - 47480653
Alignment:
| Q |
82 |
tcaaggccaaatgagctgccttctgtcctgaaatcatcattgctccaaatgttggaccct |
141 |
Q |
| |
|
|||| |||||||| || || ||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
47480594 |
tcaatgccaaatgtgcagctttctgtcctgatatcatcattgccccaaatgttggaccct |
47480653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University